Garra rufa (doctor fish): 141288322
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Entry
141288322 CDS
T11039
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
141288322 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141288322 (kdm2ab)
04121 Ubiquitin system [BR:
grf04121
]
141288322 (kdm2ab)
03036 Chromosome and associated proteins [BR:
grf03036
]
141288322 (kdm2ab)
Enzymes [BR:
grf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
141288322 (kdm2ab)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
141288322 (kdm2ab)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
141288322 (kdm2ab)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
141288322 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
141288322 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
PHD
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
141288322
NCBI-ProteinID:
XP_073676547
LinkDB
All DBs
Position
16:6583562..6613406
Genome browser
AA seq
1272 aa
AA seq
DB search
MEEESSRYSKRLRTGTRRRYQDDGISDDEIEGKRSFDIDEKLQSDRYNSDLVKIMDGKDF
TLEYIQREGLRDPIIFKKADGLGIKMPDPDFSVSDVKLFVGSRRMVDVMDVTTQKGIEMS
MGQWRRYYETPASEREKLYNVISLEFSHTKLENLVKRPTSVDMIDWVDNMWPRHLKERQR
DSTNAIIDMQYPKVQKYCLMSVEGCFTDFHIDFGGTSVWYHILRGKKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDKATMCQRIELKQGYTFMIPSGWIHAVYTPMDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPAKFRYPFYFEMCWYVLERYLYCLTNVSHLTPDFQKHSLGIG
LKKEDVIKQGGLDDHAGKVEKEEEEMAVKEESEDEAASPARPGVKVHLTPFELEGLWELV
HKLEELPAHKKCVPSGIRNAPALLSDIRKLLEEHANDNPKLSYTGKPIVKWPKRPSWYQP
PPAPLALLYRPRTPGSAPILPPVPRPVKPSSSISALRRRRVRCKRCEACLRKECGDCNYC
RDMRKFGGPGRLKKSCVLRQCLAPALPLTAVCAICKEGYQEPEDSESVQKLMECSECAQI
VHPECIKVPGEGIINKDLPSCWECPKCVQGKKTESSSSSEEETDSSMSNGSRLSGPPAKR
AYREGIGVRIGRRGRPPLSPSSLPLTRSRRQPPPSQRLLLQHQQNRRRAGALELQLRKRI
KLERNKILQSTRSSVSLSPKLLRQRSLERGGVVRAAPVRSVSRGRGMSSCRGRGVRLRGG
GRGGGLRERMESEGEREDSVEEEQEERKENGQYNGKENRPQRRGVKTGEDENGESHRNGE
SEGSSEGGEPTPSDTSVVLSDDVRGQGSCVTVTLQPSRGRRDPSSIVPKLEANLSSRSLP
QNHKALLRPPLRNGTPRSDGTHSPADRLHVNKSHALSSSSPHTLTRSASKHSHMVRSLRS
NFKDSPHRLTRERIGKKTRSERAKSSDSCPSSTLRALSGAERRERAGLEREVWVSVFRYL
TRAELCVCMAVCKSWYKWGCDKRLWTRISLSRCRSISPQALTGIIKRQPVTLDLSWANIS
KKQLGWLINRLPGLKDLVLSGCSWASVSALSSPSCPLLRSLDLSWADGVKDAQIKELLNP
PGSDNRSQMKNMLCLLLCGLEVTEATLRLIIRHMPQLTRLELSHCPITDGALNLLSAVGS
PTRNKLAHLNLAGCSRLTDRCLVYLRRLSCLYVLDLRGCKGVSRQACESFISELSVNALY
CLSDDKLIQRLS
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagagttcccgttatagcaaacgcctgcggactggcacgcgacggcgttac
caagatgatggcatttcagacgatgaaatcgaagggaaaaggtcttttgacattgacgaa
aaactccaaagtgaccgatacaactcagatctggtcaaaattatggatgggaaagacttc
accttggagtacatccaacgggagggactccgtgaccccattatcttcaagaaagcagat
ggtcttggcataaagatgcctgacccagacttcagtgtcagtgatgtgaaattgtttgtg
ggcagtcgcaggatggttgacgtgatggatgtgaccactcaaaaaggcattgagatgtca
atggggcagtggaggagatactacgagacgccggcatctgaacgtgaaaagctgtacaat
gtgatcagcctggagttcagtcacacaaaactagagaatctagtcaagagacctacgtcg
gttgatatgattgactgggtggacaacatgtggccacggcatcttaaggaaagacagaga
gattccaccaacgccattatagacatgcagtaccccaaagtacagaagtattgtctgatg
agtgtcgagggatgcttcacagatttccatatagactttggaggcacatcagtgtggtat
cacattctcaggggaaagaaggtgttctggctgatcccgcccacacctcagaacctggag
ctctatgagaactgggtgttgtcagggaaacagggtgacatctttctgggtgataaagcc
acgatgtgccaacggatcgaactcaagcaaggctacacattcatgatcccctcagggtgg
attcatgcagtttacactccaatggatactctggtgtttgggggaaactttctgcacagc
tttaacattcccatgcagctcaacatttacaacattgaggaccgcacacgggtccctgct
aagtttcgctaccctttctactttgagatgtgctggtatgttttggagcgttacttgtac
tgtctgaccaacgtgtctcacctcacacctgacttccagaagcactcacttggcattggg
ctgaagaaggaagatgtgattaaacaaggaggacttgatgatcatgcaggaaaggtggag
aaagaagaggaggaaatggcggtgaaggaggagtcggaggacgaggcagcatctcctgct
cgtccaggggtgaaggttcacctgacaccctttgagctggaagggctttgggaattagtg
cacaagttggaggaattgccagcacacaagaaatgtgttccatcaggcatcagaaacgcc
ccagcactgctcagtgacatacggaagctgctagaggaacatgctaatgataaccccaaa
ttgtcttacactggaaaaccaatcgtcaaatggcccaaaaggccctcgtggtatcagcca
ccgccggctcctctggctctgctgtaccgcccgcgcactcccggttcagcccccattttg
ccgccggttcctcggcctgtgaagccgtcgtcttccatctcggctctgagacgcagacgt
gtgcgctgcaaacgctgtgaggcctgtttgcgcaaagagtgcggcgactgcaactactgt
agagacatgaggaagtttggaggaccaggcagactcaagaagagctgtgttctccgtcag
tgtcttgcaccggcgctacctcttactgcagtatgtgccatatgtaaggaaggctatcaa
gagcctgaagactcagagtccgtccaaaagctcatggaatgctctgaatgcgctcagatt
gttcatccagaatgtataaaggtgcctggtgagggtattatcaataaggaccttcccagt
tgttgggaatgtccaaaatgtgtccagggcaagaaaacagagtcttccagtagtagtgag
gaggagacagacagcagcatgtccaacggcagtcgcttgtctggtcctccggctaagcgg
gcatacagagaggggattggggtgcgtatagggcgcagaggtcgtccgcccctctccccc
tcatccctgcctctgacccgctctagacggcagccgcccccttcccagagactcctgctg
cagcatcagcagaacaggaggagagcaggagcactggagttacagctcaggaaaaggata
aaattagaaaggaacaaaatcctccagtcgacccgttcgtctgtctctctttctccaaag
ctcctgcgtcagcggagtctggagagaggaggcgtagtcagagcggcacccgtacggagc
gtttcccgcggtcgagggatgtcctcttgtcgcggaagaggggtacgactccgaggcggt
ggccgaggaggaggtctgagagaaagaatggagtcggaaggtgaaagagaggactctgtg
gaggaagaacaggaagagagaaaagagaacggacagtataatgggaaagagaaccgtccg
cagagacgaggggtaaaaactggtgaagacgagaacggagaaagtcatcgaaacggagag
agcgaggggagcagtgagggcggagagcccactccatctgacacttctgtggtgctaagt
gacgacgtcagaggccaggggtcctgcgtcacagtgacgttacagccgtcgaggggtagg
cgtgatcctagctccattgttcccaaactggaagccaacttgtcttccagaagccttccc
caaaaccacaaagccctgctccgtcccccgctgcggaatggcacccctcgttcagacggt
actcattcacctgcggacagattgcacgtaaacaaatcacatgctctttcttcatcatca
ccacacactctgacccgaagcgcgtccaaacactcacacatggtgcggagtctcagatca
aacttcaaagattctcctcaccgcctgactcgagagagaattgggaaaaagactcggtcg
gaaagggcgaagtcctccgactcctgtcccagttctaccttgcgggccctcagcggagca
gaacggagggagcgagccgggctggagagagaggtttgggtgtccgtgttccgctacttg
actcgtgcagagctgtgcgtctgcatggctgtttgcaagagttggtacaaatggggctgt
gacaagcgtttatggacgcggatcagcctgagccgctgccgctcaataagtcctcaggcc
ctcacgggcatcatcaaacggcagcctgtcacactggacctctcctgggccaacatctcc
aagaagcagctcggctggctcatcaaccgcctgccaggccttaaagatctggtgctatca
gggtgtagttgggcgtcagtctctgcactgagctctccaagctgtcctttactacgctct
ttagacctgagctgggccgatggcgtcaaagacgcacaaatcaaggagctgctgaaccca
ccaggcagtgacaaccgttcccagatgaagaacatgctgtgcttgttgctgtgcggtctg
gaggtgaccgaagccacgctgaggctgatcatcagacacatgcctcagctcactcgtctg
gagctctcgcattgtcccatcacagatggtgctctcaacctcctcagcgccgtgggctcc
cccacacgcaacaaactcgcacacctcaacttagcaggttgcagccgcctgacagaccgg
tgtctggtgtacctgcggcgtctgtcctgtctctacgtactggacctgcgcggctgcaaa
ggggtctcgcggcaggcgtgcgaaagctttatctccgagctgtctgtcaatgccctctac
tgcctatcagatgacaagctcatccagaggctatcgtag
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