Garra rufa (doctor fish): 141290019
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Entry
141290019 CDS
T11039
Symbol
ext1b
Name
(RefSeq) exostosin-1b
KO
K02366
glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:
2.4.1.224
2.4.1.225
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
grf01100
Metabolic pathways
Module
grf_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
141290019 (ext1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
grf01003
]
141290019 (ext1b)
Enzymes [BR:
grf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
141290019 (ext1b)
2.4.1.225 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase
141290019 (ext1b)
Glycosyltransferases [BR:
grf01003
]
Glycan extension
O-Glycan
141290019 (ext1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin_GT47
RXYLT1_C
Motif
Other DBs
NCBI-GeneID:
141290019
NCBI-ProteinID:
XP_073678316
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Position
17:complement(27197069..27310524)
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AA seq
740 aa
AA seq
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MQAKKRYLISLLTGAFLVLLFYFGGGGVPGPAATGSRSRYGYNRPEQPWPHFSDPLQHFS
PWDHSDTEEYNVHISPRQKRDVNSSVYKGKRCRMQSCFDFSLCQRNGFKVYVYPQQKGEK
ISESYQNILSTIEGSRFYTSDPGQACLFVLSLDTLDRDQLSPQYVHNLKTKVQNLPLWNN
GRNHLIFNLYSGTWPDYTEDLGFDIGQAMLAKASISTENFRPNFDVSIPLFSKEHPRTGG
DRGYLKYNTIPPFRKYMLVFKGKRYLTGIGSDTRNALYHVHNAEDVVLLTTCKHGKDWQK
HKDARCDKDNAEYDKYDYREMLHNSTFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWEL
PFSEVIDWNTAAVIGDERLLLQIPSTVRSIHQDKILALRQQTQFLWEAYFSSVEKIVLTT
LEIIQDRVLQQTSRSNLMWNSHPGGLFTLPQYSSYLGDFPFFYAKLGIKPNPKFTAVIHA
VTPLVSQSQPILKLLVSVARSQYCAQIIVLWNCDKPLPAKHRWPATSVPIIVIEGENKVM
SSRFQPYDSIISDAVLSLDEDTVLSTTEVDFAFTVWQSFPERIVGYPARSHFWDNNKERW
GYTSKWTNDYSMVLTGAAIYHRYYHFLYTHFLPNSLKSMVDQLANCEDILMNFLVSAVTK
LPPIKVTQKKQYKETMMGQSSRASRWADPDHFAQRQTCMNKFASWFGGMPLVHSQMRLDP
VLFKDQVSILRKKYREIERL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccaaaaaacgatatctgatctcgctcttgactggcgcctttctagttctgctc
ttttactttggaggaggaggggtcccgggtccggcggccacggggtccaggagccggtat
ggatataatcgtcccgagcagccgtggccacacttctcggatcccttacaacacttcagc
ccgtgggaccattcggacacggaggaatataacgtgcacatatcgcccaggcagaagaga
gacgttaactcgagcgtttacaagggcaaaaggtgccgcatgcaatcatgcttcgatttc
tccctatgccagaggaacggattcaaagtgtacgtgtacccgcagcagaagggcgagaag
atctccgaaagttaccagaacattttatccacaatcgagggctctaggttttacacttct
gaccctggtcaagcgtgcctgttcgtcctgagcttggacactctggaccgcgaccagtta
tcgccacagtacgtgcacaatctcaaaaccaaggtgcagaacttgcctctgtggaacaat
ggtagaaatcacctcatatttaatttgtattcgggcacatggcctgactacacggaagac
ttgggctttgacatcggtcaggccatgctggccaaagccagcatcagcacggagaacttc
agacccaactttgacgtatccattcccctgttctccaaggagcacccaaggaccggtggg
gacagggggtacttgaaatacaacaccattccaccttttagaaagtatatgttggtattt
aaggggaaacgctatttgaccggcatcggctcggacacgaggaatgccttatatcatgtt
cataacgcggaggatgtagttctcctcaccacctgcaaacacggcaaagactggcagaaa
cacaaggacgcgcgatgcgacaaggacaacgccgagtatgacaagtacgactatcgtgaa
atgctgcacaattctaccttctgcctggttccgcgaggacgacgactgggatcctttcgc
ttcctcgaggctctgcaggcggcctgtgtgccggtcatgctgagtaacggttgggaactc
cccttctcggaggtcatcgactggaacacggctgctgtgatcggggatgagaggctccta
ctgcagatcccgtccacggtgcgctccattcatcaggataagattctggctctgcgacag
caaacgcagttcttgtgggaggcctacttctcgtccgtggagaagattgtgctcaccact
ctagaaatcatacaggaccgagtgcttcagcagacctccaggagcaatctgatgtggaac
agtcatcccggtggactttttacactgccccagtactcatcctacctgggcgacttccct
ttcttctacgccaaacttgggatcaagccgaatcctaaattcactgctgttatccatgca
gtcacacccctggtttctcagtctcagcctattctcaagctcctagtctcagtggcaaga
tcccagtactgtgctcagattattgtattgtggaattgtgacaagcctttacctgccaag
catcgatggccggccacttcagtgcccattattgtaatcgaaggagaaaacaaggtcatg
agcagtcggtttcagccctatgacagtatcatcagcgatgcagtgttaagtctggatgag
gacactgtgttgtcaaccactgaggtggatttcgccttcacggtgtggcagagcttccct
gagagaattgtgggatatcctgcccgcagtcatttctgggacaataataaggagcgctgg
ggttacacctccaaatggaccaatgactattccatggttctcaccggagctgccatttac
cacagatattaccacttcctgtatacccacttcctgccaaatagcctgaagagcatggtg
gaccagctggccaactgtgaggacatcctcatgaacttcctagtgtccgctgtcaccaag
ctgccgcccatcaaggtcacacaaaaaaagcagtacaaggagaccatgatgggtcagtca
tctcgagcctcgcgctgggcggacccggaccactttgcccagcgccagacctgcatgaac
aagttcgccagctggtttggcggcatgccactggtccactcccaaatgagactggaccct
gttttgttcaaggaccaggtctccatcctccgcaagaaatacagggagatcgagcggctc
tga
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