Garra rufa (doctor fish): 141290837
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Entry
141290837 CDS
T11039
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141290837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141290837
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
141290837
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RRM_11
Motif
Other DBs
NCBI-GeneID:
141290837
NCBI-ProteinID:
XP_073679068
LinkDB
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Position
18:17647990..17653069
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AA seq
402 aa
AA seq
DB search
MTECYIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEG
VLHAPESDWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGVQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPN
SKYFLEQAGPDEPMRSRKVFVGRCTEDMTADELRQFFMQYGEVTDVFIPKPFRAFAFVTF
ADDQVAQSLCGEDLIIKGTSVHISNAEPKHNNSRQMMDRGRFGGFGGQGFGSSRSPNSNV
NFGALSLNPAMMAAAQAALQSSWGMMGMLASQQNQTAASGTTPSGQNSGSRDQNQSYNPS
SNNYNTSSTASLGWGAGTNSGSSSGFNSGFGSSMETKSSWGM
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgacggagtgttatattcgcgtcgcggaggacgagaacgaggagccgatggagatcccg
tccgaggaggacggcaccgtgctgctctccaccgtggcagcgcagtttcccggtgcctgc
ggcctaagataccgtagccccgtgtctcagtgcatgagaggggtccgactagtggagggg
gtactccatgcacccgaatcagactggggcaatctggtgtacgtggtcaattatccaaaa
gataacaagagaaagatggatgaaatggatgctgcatcggctgtgaagatcaagagaggt
gtgcagaagacatcagatttgattgtgcttgggctgccatggaaaacaacagagcaagac
cttaaagattacttcagcacttttggagaggtgatcatggtgcaggtgaaaagagatgca
aaaactggaaattccaaaggatttggctttgtaagatttacagactacgaaacacaagta
aaagtcatgtcccagcggcatatgattgatggaagatggtgcgactgcaaactccccaac
tcaaagtatttcctggaacaggctggcccggatgagcctatgagaagcaggaaagttttt
gtgggccgctgtaccgaggacatgacagccgatgagcttagacagttttttatgcagtac
ggcgaagttacagacgtgttcattcccaaacctttccgagcctttgcctttgtcaccttt
gctgatgatcaggttgcccagtctctgtgcggcgaggacctgatcattaaaggaaccagc
gtgcacatctccaacgctgagcctaagcacaataatagtaggcaaatgatggatcgtggg
cggttcggggggtttggggggcagggctttggcagtagtcgcagtcccaacagcaatgtg
aattttggggcccttagcttgaatccggccatgatggcagctgcgcaggcagcccttcag
agtagctggggcatgatgggaatgctggccagtcagcagaatcagacagccgcttccggc
acgacccctagcgggcagaacagcggtagtagagatcagaaccagagttacaacccaagc
agcaataactacaacaccagcagcacagctagtctcgggtggggggcgggaaccaattcg
ggctcgagcagtgggttcaactccggttttggatctagcatggagacaaagtccagctgg
ggaatgtag
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