Garra rufa (doctor fish): 141295318 Help Entry 141295318         CDS       T11039                                  Symbol thbs1a Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism grf  Garra rufa (doctor fish) Pathway grf04115   p53 signaling pathway grf04145   Phagocytosis grf04148   Efferocytosis grf04350   TGF-beta signaling pathway grf04510   Focal adhesion grf04512   ECM-receptor interaction grf04518   Integrin signaling grf04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:grf00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     141295318 (thbs1a)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     141295318 (thbs1a)    04518 Integrin signaling     141295318 (thbs1a)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     141295318 (thbs1a)    04148 Efferocytosis     141295318 (thbs1a)   09143 Cell growth and death    04115 p53 signaling pathway     141295318 (thbs1a)   09144 Cellular community - eukaryotes    04510 Focal adhesion     141295318 (thbs1a)   09142 Cell motility    04820 Cytoskeleton in muscle cells     141295318 (thbs1a)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:grf04131]     141295318 (thbs1a)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:grf00536]     141295318 (thbs1a) Membrane trafficking [BR:grf04131]  Endocytosis   Phagocytosis    Opsonins     141295318 (thbs1a) Glycosaminoglycan binding proteins [BR:grf00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    141295318 (thbs1a) SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_CFP_C EGF_3 TSP1_ADAMTS cEGF EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  141295318 NCBI-ProteinID:  XP_073682628 LinkDB All DBs Position 21:complement(1541700..1549712) Genome browser AA seq 1174 aa AA seqDB search MILRGLVVCLLLWSSVSTRHLEMPDDDTVFDLFELTNVHKKHHGVSLVKGPDANSPAYKI LNPNLIPSVPELSFRDLIYSIQSERGFIFTANLKQAKRTRGTLISVERTDGSGSVFEIIS NGKANTVDLVYWTATGQHVVSIEDVNVANGHWKNITLFVQEDRAQVHVGCEEINTQELDA PIQQILNQESADISSLRIAKGAAKSDRFMGVLQNVRFVFGTTLDAILRNKGCESSTFITD VMTLETPVNGSSPAIRTDYTGHKTKDLQDICGFSCDDLSSMFKELKGLGMVVKQLSNELR QVTADNNLIMTQIKIHEGVCMHNGIVYRDKDEWTVDSCTHCTCQNSATVCREISCPLMPC ANATVPDGECCPRCGTPNDAGVDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCDGTS VQTRDCYTQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGKDCEGE GRQNEPCQKDLCPVNGGWGPWSPWDSCTVTCGGGLQRRHRLCDSPVPKYGGKECLGDSKG TRLCNSQSCPVDGCLSNPCFAGTKCTSFPDGSWKCGECPVGYTGDGLHCQDIDECKDVPD ACFVLNGVHQCVNTEPGYNCLPCPPRYSGPQPFGRGTEQAIAKKQVCTPRNPCEDGSHDC NKNANCIYLGIFSDIMYRCECKPGYAGNGHICGEDSDLDGWPNKDLQCVENATYHCKKDN CPDLPNSGQEDYDKDGTGDACDNDDDNDGITDDGDNCPFIFNPRQHDHDRDQVGDRCDNC PYDSNSEQTDTDNNGEGDACAIDIDGDGILNEKDNCPYVYNTDQRDTDGDGVGDHCDNCP LEHNRDQIDSDSDNIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHD DDNDGVPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDVDNVPDIYDVCPENFGISETDF RRFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGFDEFNAVDFSGTFFINTD RDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLR NALWHTGDTESQVRTLWHDPKNIGWKDYTAYRWQLIHRPKTGLIRVTMYEGKKVLADSGN IYDKTYAGGRLGLFVFSQEMVYFSDLKYQCRDSS NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgattctgagaggacttgttgtgtgcctcttgttgtggagttcggtgagcaccagacac ctagaaatgcctgacgatgacactgtgttcgacttgttcgagctcacaaacgtccataag aagcatcacggagtgagtttagtgaagggacctgatgcaaacagccccgcgtataagatc ctcaacccgaacctgatcccctcagtgcccgagctctccttcagggacctgatctactcc atccagagcgagagaggcttcatcttcaccgccaacctcaagcaagccaagcgcacccgc ggcaccctgatctccgtggagaggacagacggcagcgggtccgtctttgagatcatctcc aatgggaaagccaacaccgtggatctggtgtactggaccgcgaccgggcagcatgtggtg tccattgaggacgtgaacgtggcgaacgggcactggaagaacatcacgctgtttgtgcag gaggatcgagctcaggtccatgtgggatgcgaggagatcaacactcaagaactcgatgct ccgatccagcagatcctgaatcaggagagcgcggacatctcgagcctgaggatcgccaaa ggagccgccaaatctgatcgcttcatgggagttctccagaatgtgcggtttgtttttgga acaacgctggacgcgattttacgcaataaaggatgcgagagctcaaccttcatcactgat gtcatgaccctggagacccccgtgaacggatccagcccggccatccgcactgattacacc ggacacaagactaaagatctgcaggacatctgcggtttctcctgtgatgatctgtccagc atgtttaaggagctcaagggactcggcatggtggtgaagcagttgtcaaacgagctccgc caagtgacagcagacaacaacttaatcatgactcagattaagatccacgaaggcgtctgc atgcacaacggcatcgtttacagagacaaagacgagtggacggtggacagctgcacccac tgcacgtgtcagaactccgccactgtgtgccgtgagatctcctgtcctctcatgccctgc gccaacgctaccgtcccagacggcgaatgctgcccgcgctgcggaacaccgaacgacgcg ggtgtggacggctggtctccctggtccgaatggacacactgttcggtaacctgtggcaga ggcattcagcagcgcggacgctcttgcgaccggatcaatagcaactgcgacggcacatct gtccagacgagagactgctatactcaagaatgtgacaagcgcttcaagcaagatggtggc tggagccactggtctccctggtcttcctgctcagtgacgtgtggcgagggcgtcatcact cgcatccgcttgtgcaactcccctacgcctcagatgggtggaaaagattgtgagggagaa ggccgtcagaacgaaccgtgccagaaggacctgtgcccagtgaatggaggttggggaccc tggtcaccctgggattcttgcaccgtcacgtgcggtggaggactgcagcgtagacaccgt ctgtgtgacagcccagttcccaaatacggtggaaaagaatgtctgggtgactccaaagga acccgtctgtgcaactcccagtcgtgtccagttgatggatgtctgtctaacccgtgcttc gctggtaccaaatgcactagcttccccgatggctcttggaagtgcggcgagtgtccggtt ggatacactggggatggactccactgtcaagacattgatgagtgcaaagacgttcctgat gcttgtttcgtgctcaatggagtccatcagtgtgtgaacacagaaccaggctacaactgc ctgccttgcccgccacgttactctggaccccagcccttcggcaggggaacggaacaggcc attgccaaaaaacaggtctgcacacctagaaacccatgcgaggacggcagccatgattgc aacaagaatgccaactgcatctacctgggcatcttctctgacatcatgtaccgctgcgaa tgtaaaccaggctacgctgggaatggtcacatctgcggagaagactctgacctcgacggc tggcccaataaagacctccaatgtgtggaaaacgccacctaccattgcaagaaggacaac tgtcctgaccttcccaactctgggcaagaagactatgacaaagatggaactggagatgct tgcgacaatgatgatgacaacgatgggatcactgatgacggggacaattgcccattcatc ttcaacccaagacagcatgaccacgaccgcgatcaagttggcgaccgctgcgataattgc ccatacgacagtaattcagaacagaccgacactgacaacaacggcgagggtgatgcgtgt gccatcgacatcgatggcgatggcattctaaacgagaaggacaactgtccatacgtgtac aacactgaccagagagacactgacggagacggagtcggtgaccactgtgacaactgccca ctggagcacaaccgtgaccagatcgactctgactcggacaacattggagacaagtgcgac aacaaccaggacatcgatgaggacggacatcagaacaacctcgacaactgtccttacatc cccaacgccaaccaggccgaccacgacaaggacggcaaaggagacgcctgcgatcacgac gacgacaacgacggtgtgcctgatgacaaagacaactgccgacttgccttcaacccggat caattggattcggacggtgacggacgaggtgacatctgcaaggatgacttcgacgttgat aacgtgccagatatttacgatgtttgcccggagaactttggcatcagtgaaacagacttc cgcaggttccaaatggttcctctcgatcccacaggaacgtcccaaatcgaccccaactgg gtcgtccgtcaccagggcaaagaacttctgcagaccgtcaactgtgatcctggcattgct gttggttttgatgagttcaatgccgtggacttcagcggcacgttcttcatcaacacggac cgtgacgacgactatgccggcttcgtgtttggctaccaatccagctcacgtttctatgtg gtgatgtggaaacagatcacgcagacctactggtctcatacacccactaaagcacagggt tactctggactgtccatcaaagtagtgaactcgaccacaggaccaggcgagcacctcagg aacgctttgtggcacactggagacaccgagagccaggtgcgcaccctgtggcacgacccc aagaacatcggctggaaagattacaccgcctacagatggcaactgatccacagacccaaa accggactcatcagagttaccatgtatgaaggcaagaaagtcttggctgattcaggaaac atctatgacaagacatatgctggaggaagactcgggctcttcgtcttctcccaggagatg gtttacttctcagacctcaaataccaatgcagagattcatcataa

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