KEGG   Garra rufa (doctor fish): 141298843
Entry
141298843         CDS       T11039                                 
Name
(RefSeq) lysine-specific demethylase 2B-like
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
grf  Garra rufa (doctor fish)
Pathway
grf03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:grf00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    141298843
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:grf03000]
    141298843
   04121 Ubiquitin system [BR:grf04121]
    141298843
   03036 Chromosome and associated proteins [BR:grf03036]
    141298843
Enzymes [BR:grf01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     141298843
Transcription factors [BR:grf03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    141298843
Ubiquitin system [BR:grf04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     141298843
Chromosome and associated proteins [BR:grf03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    141298843
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     141298843
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box LRR_4 LRR_At1g61320_AtMIF1 Cupin_8
Other DBs
NCBI-GeneID: 141298843
NCBI-ProteinID: XP_073685260
LinkDB
Position
23:9188838..9210464
AA seq 1037 aa
MYEDWVLSGKQSDIFLGDRSDGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILHS
FNIPMQLTVYEIEDRTKVHSKFRYPFFYEMCWYVLERYVNCLTRRSHLSLDFRIHAAEPK
LVTESLVSAPRLDMEEDSCETRLERTEGANQPSSAVPPYQTFKSPANDSEDSFKSLPSEC
PKTPSGSPGMEHSGKWTHLTEFELSGLKALVEKLESLPETKKCVPEGIEDPQALLDDVKV
VLKEHADDNPKLAISGSPIVCWPKKMGKPRPLNRPKTKMGSSPSAAPGSTAGGVKLSSSR
GSSSARCRRTRCRKCEACTRKECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAV
CLVCGEAGKEDTVENEEDKFNMMLMECSICNEIIHPACLKDKDSGGVVNDELPNCWECPK
CNHAGKTGKQKRGPGFKYASNLPGSLLKEQRTNRDIKDEPESNMSTESYTSTVSPVMKKK
TEREDTPTCKSEDAFKKRSLKLEDNPLRKKRKLFEKDSDSESNVKKKKKRSKPEDLSTST
VLGQIKTEREDDEYDEDNRQELERRAYSFVPSEDEDGDDEGEEEEEEETMKESSREENGK
LVNKTSAAREGDQSQGGVTQAGPSSDSQLRSQRKTKRKPRLPNKELSKELSKQLNQEIQK
TEDRLAHQNGRVVKTEPDSDGEDRKPLKNGSSHLRDWLGPKRELNGSLREQHPVNWIRTT
PTPVIRPKPCRSPPKCVQMERHVIRPPPISPPPDGLPLDDGKNHVMRREVWMAVFSHLTH
QDLCVCMRVCKTWNRWCCDKRLWTKIDLNRCKSITPLMLSGIIRRQPVSLDLSWTNISKK
QLSWLINRLPGLRILLLAGCSWAAVSALCTSICPLLRTLDVQWVEGFKDNQIRDLLSPPT
DNRPGQLDSRSKLRNVENLCLAGLDITDTSLKLIIKHMPSLSQLDLSYCNHITDQSVNIL
TAAGTTTRDSLTHINLSVCNRVTDLSLTYFKRCGNICHIDLRYCKQVTKEGCEQFIAEMS
VSVQFRLIEEKLLSKLS
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgtatgaggactgggtgctgtcaggcaaacagagtgatatcttccttggtgatcgctca
gacggctgccagcgagtagagctgaaacagggctacacgttcttcatcccttcaggttgg
atccatgccgtctacactccagaagacaccctggtgtttggcgggaatattcttcacagt
tttaacattcccatgcagcttactgtctacgaaattgaggacagaacaaaggtacactcc
aaattccgctaccctttcttctatgagatgtgctggtatgtgttggagaggtacgtgaac
tgcttgaccagacgttcgcacctgagcctggatttccgcattcacgctgctgaacccaag
cttgtaaccgagagtctcgtctctgctcctcggctggacatggaggaggactcgtgtgag
acgcggttagagaggacagagggggcgaaccagccctcctcggctgtccctccctatcag
accttcaaatccccagccaatgattctgaagacagcttcaagtccctcccatcagagtgt
cctaagactccttctggctcacctgggatggaacattccggcaaatggacccacttgaca
gagtttgagctgagtggactcaaggccttggtggagaagctggaatcccttccagagaca
aagaaatgcgttccagagggcatcgaggatccacaagcactgctcgatgacgtgaaggtt
gtcctgaaggaacatgcagatgacaatcccaaattggccatcagtggttctcctattgta
tgctggccgaagaagatgggcaagccacggccgcttaatcggccaaaaacaaagatgggc
tcgtctccatcggctgctccagggtcaacagcaggaggagtgaagctctcgtccagtcgc
ggttcatctagtgcccggtgcagacggacacgctgtaggaagtgcgaggcatgtacgcgc
aaagagtgtggcgagtgccacttctgcaaagacatgaagaagtttggtggaccaggccgc
atgaagcagtcctgtatcatgagacagtgcatagcgcctgttttacctcacactgctgtg
tgtctggtgtgcggagaggctggaaaagaagacacggtcgagaatgaggaggacaagttc
aacatgatgcttatggagtgctctatctgcaatgagatcatccatccagcatgcttgaag
gacaaggattctggtggcgttgtaaatgacgagttgccaaattgctgggagtgtccgaaa
tgcaatcatgctggaaagacagggaaacaaaaaagaggcccagggtttaagtacgcctcc
aatctccctggctctctgctcaaagagcagcgaacgaaccgggacataaaggatgagccg
gaatcaaacatgtctacagagtcctacacctctactgtttcaccggtcatgaagaagaag
acagaacgagaggacactcctacctgcaagtcagaagacgcgtttaagaaacgttctctc
aaattggaggacaatccactccgcaagaagagaaaactctttgaaaaggactcagattca
gaatccaatgtcaagaaaaagaagaagcgctcaaagcctgaagatctctcaacctctact
gtcctgggacagatcaagacagaaagagaggatgatgagtatgatgaggataaccgacaa
gaactggagaggagagcctatagttttgtgccctcagaagatgaggatggagatgatgaa
ggggaggaggaagaagaagaggagacaatgaaggagagcagtcgagaggagaatgggaag
cttgtaaacaagacctccgctgcacgggaaggtgaccaatcacagggcggtgttacccag
gcggggcccagcagcgactcgcagttgaggagccagcgaaaaaccaaacgtaagcctcgc
ctgcccaacaaagaactgagcaaagaactaagcaaacaactcaatcaggagatccagaag
acagaggatcgtctggctcatcaaaatggcagggttgtgaagacagaaccagatagtgat
ggagaggacagaaagccactgaagaatggcagcagccatctgagagactggctggggcct
aagcgggaactaaacggatccttgcgagagcagcatccggttaattggatcaggactaca
cctacccctgtcattcggccaaaaccttgccgctctccaccaaaatgtgttcagatggag
cgtcacgttattcgcccccctccgatcagcccccctccagatggtctgcccctagatgat
gggaaaaaccacgtcatgcggagagaagtatggatggcagtgttcagccacctcacacac
caagacctgtgtgtctgcatgcgagtctgcaagacctggaacagatggtgttgtgataaa
agactgtggaccaagatcgatctaaaccggtgcaagtcaatcactccactcatgctgagc
ggcattatccgcagacagccggtctccctggacctgagttggaccaacatctctaaaaag
cagctcagctggctaatcaacagattacctggtctaaggattctgttgctggcaggctgt
tcatgggcagctgtatcagctttgtgcacatccatttgtcctttgctaagaactttagat
gtacagtgggtagagggattcaaggacaaccagataagagacttactctccccaccaaca
gacaacagaccaggtcagttggacagtagaagtaaactgaggaatgtggagaatctttgt
ctggctggtctggacatcacagatacgtccctgaagctgatcataaaacatatgccttca
ctgtcccaattggaccttagttactgtaaccacatcaccgaccagagtgtgaacatcctc
acagcagccggaaccacgaccagagactctctcactcacatcaacctttcagtttgtaac
agagttacagacctgtcgttgacctacttcaaacgctgcggaaacatttgtcacatcgac
ctgcgctactgcaaacaggtgaccaaagagggttgtgagcagttcatcgcagagatgtcc
gtcagcgtgcagttcagactgattgaggaaaaactactgagcaaactgagctag

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