Garra rufa (doctor fish): 141300652
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Entry
141300652 CDS
T11039
Symbol
abcd4
Name
(RefSeq) lysosomal cobalamin transporter ABCD4 isoform X1
KO
K05678
ATP-binding cassette, subfamily D (ALD), member 4 [EC:
7.6.2.8
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf02010
ABC transporters
grf04146
Peroxisome
grf04977
Vitamin digestion and absorption
grf04980
Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
141300652 (abcd4)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
141300652 (abcd4)
09150 Organismal Systems
09154 Digestive system
04977 Vitamin digestion and absorption
141300652 (abcd4)
04980 Cobalamin transport and metabolism
141300652 (abcd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141300652 (abcd4)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
grf02000
]
141300652 (abcd4)
Enzymes [BR:
grf01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.8 ABC-type vitamin B12 transporter
141300652 (abcd4)
Membrane trafficking [BR:
grf04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
141300652 (abcd4)
Transporters [BR:
grf02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD4 subgroup
141300652 (abcd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
AAA_30
AAA_16
AAA_7
FtsK_SpoIIIE
DUF87
AAA_22
IRK
AAA_5
T2SSE
ORC-CDC6-like
AAA_29
Motif
Other DBs
NCBI-GeneID:
141300652
NCBI-ProteinID:
XP_073687049
LinkDB
All DBs
Position
24:33514486..33527792
Genome browser
AA seq
603 aa
AA seq
DB search
MPPMKNNSVKRPKLDWRFVQRFCRILKILFPSWSNQSVRMFMTLLGVTLSVQLVIYQVGL
VPSQFYEVLSDKNYGKFKNLVLFAVMLILINSTLKSLDQYISSLLYVSWRKSLTEELHNT
YFKGRVYYTLNVLCKDIDNPDQRISQDVERLCKQMSTMASRLLISPFTMTYYTYQCFNSA
GWIGFVSIFGYFVVGTIINKILIGPIVSMLVEQEKLEGDFRFKHMQIRVNAESAAFYRAG
KVEQMRTDRRLQMLLSTQRSLMNKELWLYIGVNTFDYLGSILSYIVIAIPIFAGDYDGLT
PGELSALVSKNAFVCIYLINCFTQLIDLSTTVSDVAGYTHRIGELREVMADIAKKQCDQD
QYDQPLKNEPYSDQELHSVPADTAFVLDHLSYKSPSEDLLVKDLSLKISQGTHMLVVGNT
GTGKTSLLRVLNGLWEPCNGSVEMTTCFGPRGVLFLPQKAYLTDGTLREQVIYPLKDIYP
SSGSIDDERILKHLELVGLSNLLTRIGGLDTKVNWNWYDVLSPGEMQRLCFARLFYLQPK
YAVLDEATSALTEEAECQLYKACKQLGMTLISLGHRSTLEKHHDVMLRLCGGGQWELTKL
KVA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgatgaagaacaacagtgtgaaaagaccaaagctagactggaggtttgtccaa
aggttctgcagaattctgaagatacttttcccatcctggtccaaccaaagtgtccgaatg
ttcatgacccttctgggagtcacgctttcagttcagctcgtgatttatcaagtgggtctt
gttccaagtcagttctacgaggttctgtctgataagaactatgggaagttcaaaaatctg
gtgctatttgcggttatgctcatactgattaattcaacgcttaagagtctggaccagtac
atctctagtcttctgtatgtcagctggagaaagtctttgactgaagaactccataacaca
tacttcaagggacgtgtttactacaccctcaacgtactgtgcaaagacatcgacaaccca
gaccagcgcatcagtcaggatgtagagaggttatgtaagcagatgagcactatggcaagt
cgacttctcatttcaccgttcactatgacctactacacctatcagtgcttcaacagcgcc
ggctggattggatttgtaagcatctttggctactttgtggttggaaccatcatcaacaag
atcttaataggacccatcgtgtccatgctggttgagcaagaaaagttggagggagatttt
agatttaaacacatgcaaattcgagtgaatgcagaatctgccgcgttctacagggcaggc
aaggtggaacaaatgcggactgaccgaaggctgcagatgctcttatccactcaaagaagc
ttgatgaacaaagagctttggctttacattggagtgaacacctttgactacctgggcagt
atcctcagctatatagtgatcgcgatccccatctttgctggtgattacgacggcctgaca
cctggagaactgagtgctctagtcagcaagaatgctttcgtctgcatctatctgataaac
tgcttcacgcagctcatcgatctctcaaccacagtgtcagatgttgctggatacacgcac
cgaattggagaactccgggaagtgatggcagacattgccaagaaacagtgtgaccaggat
cagtacgatcaacctttaaagaatgaaccttacagtgatcaggagcttcacagtgttcca
gcagacactgcatttgtattggatcatctctcttataaatcaccatctgaggatctgctg
gtgaaagatctaagcctaaagatcagtcaaggaacacacatgcttgtggtgggaaacacg
ggaacggggaagacctccctgctcagggtcctcaacggcttgtgggaaccatgcaatggt
tctgtggagatgaccacatgttttggaccgaggggtgtgcttttcctgccacagaaagca
tatcttactgatggcactctcagagaacaggttatctatccgttaaaggatatatatcct
tcctcaggatctatagatgatgaacgaatattaaaacacctggaacttgttggtttgtcg
aatctactgaccagaattggaggactggatacaaaagtaaactggaactggtatgatgtt
ttatcgccaggagaaatgcagaggctttgttttgctagactgttttacctccagcccaaa
tacgcagtactagatgaggccactagcgctctgactgaggaggctgagtgtcagctctat
aaggcttgtaaacaactgggaatgaccctcatcagtctgggtcaccgtagcactctggaa
aagcatcatgatgtcatgctgcgactgtgtggaggtggccaatgggagctcaccaaactc
aaagtggcgtga
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