Garra rufa (doctor fish): 141301244
Help
Entry
141301244 CDS
T11039
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
141301244 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141301244 (tdg.2)
Enzymes [BR:
grf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
141301244 (tdg.2)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
141301244 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
141301244
NCBI-ProteinID:
XP_073687600
LinkDB
All DBs
Position
25:20420478..20426185
Genome browser
AA seq
419 aa
AA seq
DB search
MAVRPPIKMEERQYSSLTAPMDYLQYWYQTNTQQYQAEQVVQHHQMVNAAQYVERPMEDK
IMTDLSVHQEPYLDPPQHLDPPQNLDPPQQPHQLYAQPPVAALPTTPAKGKKRGRPPKGE
GKERSEAEEAAKKAKRTLDRFNGMSVEEVMAKKLPDVITHNLDMLIIGINPGLLSAYKGR
HYPNPGNHFWKCLYLSGLTEEQLNHMHDQTLPERYGIGFTNMVERTTPGSKDLSNKEIRE
GGHQLLEKLQEYRPLIAVFNGKCIYEIFCKEIFGVKAKNLEFGLQPYKVPETETVCYLMP
SSSPRCAQFPRAQDKVHFFIKLKELRDEMKGVVRTPEVEETDYKFDLGLAKEDAKRLAIK
EEQHDPGYEETCAHGSQGQPQQEFGLHPSTDTDQDNRWTMQPFADQIPDIRYSNSNRTA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaagaccaccaattaagatggaagaaaggcagtattcatctctgacggcccct
atggattatcttcagtactggtaccaaaccaatactcagcagtaccaggcagagcaggtg
gtgcagcaccaccagatggttaatgccgcccaatatgtcgagagacctatggaggataaa
atcatgactgatttatcagtacaccaagaaccatatctggatccacctcagcatctggat
ccccctcagaatctggacccacctcaacagcctcatcaactgtatgcccaaccaccagtt
gcagcccttccgacgactccagcgaaaggaaagaaaaggggaaggcctccaaaaggtgaa
ggaaaggaaagatcagaagctgaagaggcagccaagaaagcaaagaggacgttggatcgg
ttcaacgggatgtccgtggaggaagtcatggctaaaaagctgccagacgtcatcacacat
aatctcgacatgctgattatcggcatcaatcctggactgttgtcagcctacaagggacgt
cattatccaaatcctgggaaccatttttggaagtgcttatatctttccgggctgaccgaa
gaacagctcaaccacatgcacgaccagacactacctgaacgatatggcattggtttcacc
aacatggtggagaggactacacctgggagtaaagacctatcaaacaaagagatccgtgag
ggtggccaccagcttttggaaaagctccaggagtacagacctttaatcgctgtgttcaat
ggaaaatgtatttatgaaatattttgcaaggagattttcggagtaaaggccaagaactta
gagtttggattgcagccttacaaagtgccagaaactgagacggtttgctatctgatgcca
tcatcaagcccacgctgtgcccagtttcctcgcgctcaggacaaagtgcacttcttcatc
aagttaaaagagctcagggatgaaatgaagggagtggtgaggactcctgaggtcgaagag
acagactacaaatttgatctgggtctggccaaagaggatgccaaaagactggcaatcaaa
gaagagcagcatgacccggggtacgaggaaacctgtgcccatggatcacaggggcaacca
cagcaagagtttgggctccatccttctacagatacagatcaggacaaccggtggacaatg
cagccgtttgcagaccagattccagacatcagatatagcaacagcaaccgaacagcttga
DBGET
integrated database retrieval system
