Garra rufa (doctor fish): 141320420
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Entry
141320420 CDS
T11039
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141320420 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141320420 (eftud2)
Spliceosome [BR:
grf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
141320420 (eftud2)
Complex C
U5 SnRNP specific factors
141320420 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
141320420
NCBI-ProteinID:
XP_073689406
LinkDB
All DBs
Position
1:46386052..46401530
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AA seq
973 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEEVDADDRDADEADEEEEDDDQAEADEEEGGGGMEVVL
HEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKMKRFTLMEQELPATVYDMEFL
ADLMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGV
GIKSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSAVRLSDGIVLFIDAAEGVMLNT
ERLIKHAVQEKLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDESLI
VSPLLGNVCFASSQYSICFTLGSFAKIYSDTYGDIHYMEFAKRLWGDIYFNPKTRKFTKK
APNSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLV
CNRFFGEFTGFVDMCVQHIPSPQGGAKAKIEHSYTGGLDSDLGETMSECDPDGPLMCHTT
KMYSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYSLEDEEDSQICTIGRLWISVARYQI
EVNRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSE
LPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPV
VTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQ
TKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPL
CDEPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAP
ADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALS
VFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLL
ELAKQDVVLNYPM
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctttatgatgagtttggaaactatattggaccggagctagactctgat
gaagatgaggaagtagatgcagatgaccgggacgctgatgaggcggatgaggaggaggag
gatgatgaccaggctgaggctgatgaggaggagggtggtggtggtatggaggtggttctg
catgaggataaaaagtattatcccacagctgaggaagtttatggtcctgaagtggagact
atcgtccaagaagaagatacacaaccattgacagagcccatcataaaacctgtaaagatg
aagcggtttactctgatggagcaagagcttcccgccacagtctatgacatggagtttctt
gccgatctgatggacagctcagagctgatcagaaatgtcaccttgtgtggacacttacac
cacggcaagacatgctttgtggattgcctcattgaacagacacatcctgaaatccgcaag
agagatgacatggatctgcgatacacagatatcctcttcacagagcaagagaggggagtt
ggcatcaaaagtacacctgtgaccatggtgctgcctgactcccgggggaaatcctacctc
ttcaacatcatggacacaccaggtcatgtgaatttctctgatgaggtgacatcagcagtc
agactgtctgacggcatagtgctttttatcgatgctgctgagggggtgatgctaaacact
gagcgactgatcaagcatgcagtgcaggagaagttggccatcactatctgtattaataaa
gtggatcgtctcattgtggagctcaagctgcctcctactgatgcctactacaaactgcgc
cacattgtggatgaagtcaacggcttgttgagcacatactcaaccgatgagtctttgatt
gtctctccactcttgggaaacgtgtgtttcgcttcctcacaatacagcatctgcttcact
cttggctcctttgccaaaatctattcagacacctacggtgacatccactacatggagttt
gctaaaagactgtggggagacatttacttcaaccctaaaacgaggaaattcacaaagaaa
gcccccaacagcaattctcagcgcagctttgttgagttcgtactggagccgctgtacaag
attctctcacaggtggtaggggatgtggatacgtctctgcctcgtgtcttggatgagctg
ggcattcatctgactaaagaggagttgaagcttaacatcagacctctgctgcgccttgtc
tgtaaccgcttttttggagagtttacaggctttgtggacatgtgcgtgcaacacatacca
tctcctcaggggggtgccaaagccaagatagagcacagctacacaggtggactggactca
gacctcggagaaacaatgtctgaatgtgaccctgatggtccactgatgtgccacactact
aagatgtacagcacagatgacggcgtgcagttccacgcattcggtcgagttctgagcgga
accctgcaggcgggacagccggtgaaggttctgggagagaactacagcctggaggatgag
gaggactcacagatctgcactatcggacgtctgtggatttctgttgctaggtatcagatt
gaagtgaatcgcgttcctgctggtaactgggtgttgatcgaaggatgcgaccagcctatt
gttaaaacggccacaatcacagagcctcgtggaaatgaagaggcgcagatcttcagacca
ttgaagtttaacacagcgtcagtgataaaaatcgctgtggagccggtcaatccctcagaa
ctgcccaagatgttggatggactaagaaaagtcaacaagagttatccatcactcacaaca
aaggtggaggagtcaggtgaacacgtgattcttggtacaggtgagctgtacctggactgt
gtaatgcacgacctgcggaagatgtactctgagatcgatatcaaggtagctgatccagtg
gtgactttctgtgagactgtagtagagacatcctcccttaagtgttttgctgaaacgccc
aataaaaagaataagattacaatgattgccgagccgttggagaagggtctagctgaagac
attgagaacgaggtggtgcagatcacatggaacagaaaaaaattgggagaatttttccag
acaaagtatgactgggatttgctagcagctcgttccatttgggcttttggacctgacaca
actgggcccaacattttggtagacgacactttgccctctgaggtagacaaagctcttctc
ggctcagtgaaggacagcattgtacagggcttccagtggggcacacgcgagggtcctttg
tgtgatgaaccaatccgcaacgtgaagtttaagatcctagatgcggtgatcgcacaggag
ccgctgcatagaggaggaggacaggtcatccctacagctcgcagagtcgtctactctgcc
ttcctgatggccacgcccaggctgatggagccctattactttgtggaggttcaggcccct
gctgactgtgtttctgctgtgtacacagtgctggcacgcaggagaggtcatgtgacgcag
gatgcgccaatccctggctctcctctctacaccatcaaggctttcattcccgctatcgac
tcctttggctttgaaactgatcttcgcacacacacacagggccaggccttcgcgctcagt
gtgttccaccactggcagatcgttcccggtgatcctctggataagagcattgtgattcgt
cctctagagcctcagccggcccctcatctggccagagagtttatgatcaaaacccgcagg
cgcaaaggcttgagcgaggacgtcagtatcagcaagttcttcgatgaccctatgttgttg
gagctggccaaacaagacgtggtgctcaactacccgatgtga
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