Garra rufa (doctor fish): 141333831
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Entry
141333831 CDS
T11039
Symbol
smcr8a
Name
(RefSeq) guanine nucleotide exchange protein smcr8a
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
grf Garra rufa (doctor fish)
Pathway
grf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141333831 (smcr8a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141333831 (smcr8a)
Membrane trafficking [BR:
grf04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
141333831 (smcr8a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
ERM_helical
Motif
Other DBs
NCBI-GeneID:
141333831
NCBI-ProteinID:
XP_073695083
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Position
1:complement(32528594..32535351)
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AA seq
859 aa
AA seq
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MIGSPDVVAFTKEDDFGDSFSDPWSLPEEFSVPLFAHTANANPWTKTSYAKFPKDFILIS
EFSEQVGPQPLLTIPNDPKVCGTFDLNYFSLRIMSVDYQASFVGHPPGSNYPKLNFVEDS
KVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADERKIMHQFQEMSAEFSKASE
FLKSGNRRAFANELEKKLKDLEYTRSVLHKEAELQKMNNGCYSTQAIEKANELANMEKSI
YEHRDLLRQITSYPSRKKKDADFVQRETEKPADMNVVDDTVNLNHSDTGDKTVETESESR
KSSYTPQLIKAKSAKCFDKRLKTMEELCDASFFHQTLEQLNLIEKSFRGDLCLIYTSQID
KALLSKQRVTSFLFEAERDRECEGTSKNLNISSNNPIVPILNLSGEPMSLESYTTCIDVD
HIKPGVESMEGPHESSTSDITQETSEAADTETKGSFSSDKSIEAFGSVSPSSLHVNFFDG
LERKSKVSIASPSENASKSIAVPPRTSDGNLVPMDAACCIGQDGFIFDEPLPELAQECCS
DTVVNQEPLSFLQGDPALQMDYILEDSESPNMGLTFSELNATVLSEEVAKINIEDVSDST
SFMSASTSSDRAMSPFIYGSALTLKQKKKAGHSALRFIRQYPFAQQAIFCLLSGRTLVIL
GVDEGTVRKLVNALFIFVPNLGKYGETVQPWLSSPFQLTDLQRWKLIGLQRAASPPGSSI
LHSLNRYSRYISILDCDSKTLRCPPYKGTLISHLADHRTQIKRGSTYFLHVQGMLTQLTA
KAFLYTFCHHIHLPMDVNDQGSVTTRRTNFLLQLGYTVEESKIVQYLSELIKQHYLQGSP
KGVNPSFCFNYTTSYLYKI
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgattggctcaccagatgtggtggcttttaccaaagaagatgactttggagactcgttc
tcggatccgtggtcgcttccagaggagttttctgtgcctttgtttgctcacactgccaat
gcaaatccctggacgaagacatcctatgcgaaattcccgaaagatttcatactcatctct
gaattttctgaacaggtcggtccacagcctttactcaccattcccaatgatcccaaagtg
tgtgggacgtttgaccttaactacttctcgcttcgcatcatgtctgttgactaccaggca
tccttcgtcggacaccctcctgggagtaactacccaaagcttaattttgtggaggactcg
aaagttgtcctgggtgattccaaggaaggggcgtttgcgtacgtccatcatctgacgctg
tatgatttggaggctcgtggatttgtacggcccttttgcatggcctacatctcagcagat
gagaggaaaatcatgcatcagtttcaagaaatgtcagctgagttttccaaggcatctgaa
tttttaaaatcaggaaaccgaagggcttttgcaaatgaattggaaaagaaactgaaagac
ttggagtacaccagatcagtgctgcacaaagaggccgaactgcagaaaatgaacaatggc
tgttattcaacccaagctattgagaaggcaaatgaattggcgaatatggagaagtccatc
tatgaacacagagacctgctgaggcaaatcacttcttatccttccagaaaaaagaaagat
gcggattttgtacagcgtgagacggagaaaccagctgacatgaatgtggttgacgatacg
gtgaatttgaatcattctgacactggagataagactgttgaaaccgaaagcgagagtaga
aagtcctcttacacgcctcagctcattaaggccaagtctgcaaaatgctttgataaacgc
ttgaaaacaatggaggagctttgcgacgccagcttttttcaccaaactctagagcaacta
aacctaattgaaaagtcattccgaggagatctatgcttaatttacactagccagattgac
aaggctcttctgagcaaacagagagttactagctttctcttcgaagctgaacgtgaccgg
gagtgcgagggaacctcgaagaacctcaatatttcttccaacaatccaattgtccccatt
ctgaacttatccggcgagccgatgagtcttgaatcgtacaccacctgcatagatgtagat
cacattaagccaggtgtggagtctatggaagggcctcatgagtctagtacatctgacatt
acgcaggaaacctcagaggccgccgacacggagaccaaagggagttttagtagcgacaag
agcattgaggcttttggaagtgttagtccctctagcctacatgtgaatttctttgatggt
cttgaaagaaagagcaaggtatccattgcatctccatctgaaaatgcatccaagtctatt
gccgtcccaccaaggacgtctgatggcaatctagtcccgatggatgcagcctgctgtatt
ggacaggacggtttcatttttgatgaacctttgcctgagcttgctcaggagtgctgcagc
gacacagtggtgaaccaagaacctctgtcttttcttcaaggagaccctgccttacagatg
gactacattttggaggactcagagagcccaaacatgggactgactttttccgagctaaac
gctactgttctttccgaggaggtggcaaaaattaatattgaagatgtctccgatagtaca
agcttcatgagcgcctccaccagttctgatcgagccatgtctccgttcatctacggcagt
gcattgaccctaaaacaaaagaagaaagctggtcacagtgctcttcgattcatcaggcaa
tacccgttcgctcagcaagccattttctgccttctgagtgggcgaacacttgttatttta
ggggtggacgaaggcacagtgaggaagctggttaatgctttattcatcttcgtgcctaat
cttggcaagtatggtgaaaccgttcaaccgtggctttcatcaccatttcagctgaccgac
ctgcagagatggaagcttattggattgcagagagctgcctccccgcctggatccagcatt
ctccactctttgaatcgatacagccgttacataagcattttggactgtgacagcaagacc
ctccggtgtccgccgtacaaaggaacactaataagccatttggcagaccacaggactcag
atcaaacgcggcagtacctacttcctccatgttcagggtatgttgactcagcttacagcc
aaggccttcctttacacgttctgccatcacattcaccttcccatggacgtcaacgatcag
ggctcggtaacgacacgcaggactaatttcttgttgcagctcggctacactgtggaggag
agcaaaatcgtccagtacctgagtgagctcattaagcagcattaccttcaggggtctccg
aagggggtcaacccatctttttgttttaattacaccaccagctatttgtacaaaatctga
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