Garra rufa (doctor fish): 141335392
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Entry
141335392 CDS
T11039
Name
(RefSeq) TNF receptor-associated factor 2
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04010
MAPK signaling pathway
grf04137
Mitophagy - animal
grf04141
Protein processing in endoplasmic reticulum
grf04210
Apoptosis
grf04217
Necroptosis
grf04621
NOD-like receptor signaling pathway
grf04622
RIG-I-like receptor signaling pathway
grf04920
Adipocytokine signaling pathway
grf05132
Salmonella infection
grf05168
Herpes simplex virus 1 infection
Brite
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141335392
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
141335392
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
141335392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-RING_6
zf-C3HC4_2
Sina_ZnF
zf-C3HC4_4
SlyX
Rootletin
Motif
Other DBs
NCBI-GeneID:
141335392
NCBI-ProteinID:
XP_073696938
LinkDB
All DBs
Position
5:complement(51739765..51752039)
Genome browser
AA seq
501 aa
AA seq
DB search
MAAQEPSPPSSMENNKPGFPKKILANKLEDKHLCNCCQNILRRPFQAQCGHRFCSYCFNR
TVGSGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVENLPAVCFNEGCSWKGSIRD
YELSHEGKCEFMILPCPLCKELIRLNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRYHVVGCDMSVEKEKIHDHERACA
HEHLNLLLHYIMGMKLQLHSEKTKVADLGRRCQELEVKAGTFEDVVCVLNREVERFATTM
EASNRQHRLDQDKIEALSNKVRQLERQVGVKDLTVAEMEGRLREMSATTFDGVFIWRISD
FTKKRQDAIAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMRGMSDA
LLKWPFNQKVTLMLLDQSNREHIIDAFRPDITSSSFQRPVSEMNIASGCPLFCPLSKLEG
KNSYIRDDTIFIKAIVDLTGL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaagaaccctctcccccgtcctccatggagaacaacaagccagggttccca
aagaagattctggccaacaaacttgaagacaaacatttatgcaactgctgtcagaacatt
ttgagaagaccgttccaagcgcagtgcggccatcgcttttgttcttactgcttcaaccgg
actgttggatctggacctcagaaatgtaatgcctgcatcaaggaggacatcttcgaagag
cccacgtcaatcctcaaacaaggctgcgcgtttcctgacaatgctgccagaagagaagtt
gaaaatcttccagctgtgtgcttcaacgaaggctgttcctggaaaggcagtattagagat
tatgagttgagccatgaggggaagtgtgagttcatgattctgccgtgtcccttgtgcaaa
gagctcattagattgaacgaacaggagcgtcataatgaacgcgagtgtccggagagaacg
ctcaactgcaagtactgtaaagaaccatttcacttcaaaaacatcaaggcccatgatgag
atctgtcccaaatatcctatgatctgtgaaggatgtgcgaagaagaaaatcccaagggaa
aagtatgttgaccacatcaagttctgcagcaaattcaggacgccctgcagatatcatgtg
gttggctgtgacatgtcagtggagaaggagaagatccatgatcatgagcgtgcctgtgct
cacgaacatctcaacctgcttctgcactacatcatgggcatgaagctccagctccacagt
gagaagaccaaggtggctgatctgggccgtcgctgtcaggagctggaggtgaaggcaggg
acgtttgaagatgtggtctgcgtgcttaaccgagaagtggagcgcttcgcaactaccatg
gaggccagcaaccgccagcacagactcgatcaggacaaaatcgaggctcttagtaacaag
gttcgtcagctggagcgccaggtgggtgttaaagacctgactgtggctgaaatggagggc
agattgcgggagatgtctgctaccacgtttgacggtgtcttcatctggcggatatcagac
tttactaagaagagacaagatgccattgctggacgggcgcctgccatgttttcacctgca
ttttacacaagcaagtatggttataagatgtgcctgcggatttacctgaacggggacggg
acgggtcgtggaacgcatctatcgctgttttttgtggtgatgagaggaatgagtgacgcg
ctgctcaaatggccctttaaccaaaaggtgacactgatgctgctggaccagagtaacaga
gagcacatcatcgacgctttccgtcccgacatcacttcctcctcattccagcggcccgta
agcgagatgaacatcgccagtggctgcccgctcttctgtccgctgtccaagctggagggc
aagaactcatacatacgtgacgacaccatcttcatcaaagccatcgtggacctcactggc
ctttag
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