Garra rufa (doctor fish): 141336374
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Entry
141336374 CDS
T11039
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
141336374 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141336374 (kdm2aa)
04121 Ubiquitin system [BR:
grf04121
]
141336374 (kdm2aa)
03036 Chromosome and associated proteins [BR:
grf03036
]
141336374 (kdm2aa)
Enzymes [BR:
grf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
141336374 (kdm2aa)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
141336374 (kdm2aa)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
141336374 (kdm2aa)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
141336374 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
141336374 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
PHD
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
141336374
NCBI-ProteinID:
XP_073698055
LinkDB
All DBs
Position
6:18194370..18227727
Genome browser
AA seq
1320 aa
AA seq
DB search
MENGQEILTLVDGGMLLMRRRGRKRKSQQNDEDVTLKRSGTRRRYQDDGISDDEIDGKRT
FDLEEKLHNSRFSSDRVKRMEGKDLTFEYVQRCGLRDPIIFERPDGLGIKMPDSSFSVND
VKLYVGSRRMIDVMDVATQKGTEMSMAQWRRYYETPPSQREKLYNVISLEFSHTKLESLV
KRPSTVDMIDWVDNMWPRHLKERQRDSTNTITEMQYPKVQKYCLMSVQGCFTDFHIDFGG
TSVWYHILRGCKVFWLIPPTPQNLELYENWVLSGKQGDIFLGDKATDCQRIELKQGYTFI
IPSGWIHAVYTPVDTLVFGGNFLHSFNVPMQLHISNIEDRTRVPAKFRYPFFYEMCWYVL
ERYLYSITNTSHLIPEFQKYSLGIGLKREGSGCEVLNGHAKEERDDSDAPSSPNAPGVKL
HLTPFELEGLWHLVGKLESLPSQKKCVPSGIHNAAALLHDIRALLKEHANDTPKLSYTGK
PIVRWPKRPPWYQPPPPPPPVMRPKLATTPIIPRPVKPASNMSVLRRRRVRCKRCEACLR
TECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSAVCEICGEGNQDTGEELMECSN
CAQITHPSCLKTSGEGVVNKDLPSCWECPKCVMGKDTDSESSGSGDDITAQDGSGGLGGE
GGAWHGVGRPPSSLSHGSLQKRAAAPEQRLRKRLKLEGGKTHKRKSSSLDPRVAKIYRRH
GMEHDDDSGSDDDSGKMSSVRGGVSSSRRGYGSSRRGVWRGSSHRGSRGGGSLATSSLKM
RRGLGARGERGGRVRLRGGSHMRRRRYETEDEDDDDDDDDDDDDDDDEEDDSEEERHIGR
SDKEHRSRRRRRRGDDYDDDDDEDDDDEEDSEEQDFEGDDDEMEDLDDGGEEDEDDEDGE
NQSDSDPDPPVLLVSDLNDDLLNDSYLTVTLQRPPKAKRDPGSIVPKLEAAMSPRTPSSA
GFIQRKTLPRTRLRNNTSTPAGNGLSQSKSGHASGRHTRRSSNQDGRERDTPSPSSMSSR
SSVSPPPPPPAISTSSPPSLLSHPSFRDVGNERGCEKDIWMSVFRYLERTDLAVCMRVCK
AWYKWCCDKRLWTHIDLSRCRTLGPQALSAIIKLQPVTLDLSWTQVSKKQIAWLIHHLPS
LKDLIMLGCSSLCVSALSTQSCPGLRILDLSWAMGVKDSQLKDLIVQPGSESRSRLRGLL
TLRLAGLDVNDSTLKMIVRHMPLLRRLDLSHCQGLTDQSINLLTATGCNTRNTLRQLNLS
GCNKLTDACLSYMKRLSALALLDLRGCRNVTRRGCENFISDLSYCTIFCLTEDRLIQRIS
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgggcaggagatccttacgcttgttgacgggggaatgttgttgatgagacgc
agaggcagaaagaggaaaagccagcagaacgatgaagatgtgacactgaagcggtctggc
acgcggcggcgttaccaagacgatggcatttccgacgacgagatcgatggaaagaggact
ttcgatctggaggagaagctccacaacagccgcttcagctcagacagagtcaaacgcatg
gagggcaaagacctcacatttgagtacgtccagagatgtgggctcagggaccccatcatc
tttgagagacctgatggacttggcattaaaatgccagattcaagcttcagtgtaaatgat
gtgaaattgtatgtaggaagtcggcgtatgatagatgtaatggatgtggctactcagaaa
gggacggagatgtcaatggcacagtggaggcgctactatgaaactcctccctctcagaga
gagaaactttataatgttatcagccttgaatttagccacactaaattagagagccttgtc
aaaagaccttcgacggtggacatgattgattgggtggacaatatgtggccacgccacctt
aaggaaagacaaagagattcaacaaacactatcactgagatgcaataccccaaagtgcag
aagtactgcctaatgagtgtgcagggctgtttcacagattttcacatagactttggaggc
acatctgtgtggtaccacatattacggggctgcaaggtattttggttaatcccacccaca
ccacaaaacctggagctttatgagaactgggtgttgtcagggaaacaaggtgacatcttt
cttggtgacaaggccactgattgccagaggattgagctcaagcagggctacacgttcatt
attccatcaggttggatccatgcagtgtacactccagtagacacactagtgtttggtggg
aactttctgcatagtttcaacgtccccatgcaacttcacatctccaacattgaggacagg
acgcgggtgcctgctaagttccggtatccattcttttatgagatgtgctggtacgtgttg
gagcgttatctgtacagcataaccaacacctcccacctcatccctgagttccagaaatac
tctctgggaattggcttgaagcgggaaggctcaggttgtgaggtactaaatggccatgct
aaagaggaacgagatgacagtgatgctccctcttcacctaatgcaccaggggtgaagctt
cacttgactccttttgagctggagggcttgtggcacctggtgggaaagttggagtcgctg
ccctcacaaaagaagtgcgtgccttcaggaatacacaacgccgctgccctgctacacgac
atacgggcattattgaaagaacatgccaatgatacccctaaactctcttacactggaaaa
cccattgtcagatggccaaagaggcctccctggtaccagccccctcctccccctccacct
gttatgcgtcccaagctggcaaccacacccattattccacggccagtgaaaccagcctct
aatatgtcggtcctgcgaaggcgccgcgtgcgctgtaaacgctgcgaggcctgtctgcgc
acagaatgtggcgactgcaacttctgcagagacatgaagaaatttggtggccctggcaaa
ctcaaacaaacctgtgtcttgcgccagtgtcttgctcctggtctgccgctctctgccgta
tgcgagatctgtggggaaggcaaccaggacactggtgaagagctcatggagtgctccaac
tgtgctcagattacacatcctagctgtttgaagacatctggtgagggagtggtaaacaaa
gacctaccgagctgctgggaatgtcctaaatgtgttatgggcaaagacaccgattctgag
tcgtcaggcagcggtgatgacatcacggcacaggatgggtcaggggggctcgggggcgag
ggcggggcatggcacggggtcgggcggcccccctcttctctctctcatgggtcgctccag
aaacgggccgcagcccctgagcagcggctcaggaagcggctcaaattggaaggtggtaaa
acacataaacgcaagtcgtcatctcttgatcctcgcgtggctaaaatctatcggcgacat
ggaatggaacacgatgatgattcaggcagtgatgacgatagtggcaagatgtcttcagtc
cggggcggggtctcttcatcccgccggggttatggatccagcaggcgaggtgtttggaga
ggctcctcgcatcgagggagtcgaggaggcggcagcttggcaacaagttcgctgaaaatg
aggcggggacttggggcaagaggggagagaggaggtcgggttaggttaagaggaggatcg
cacatgaggcgacggcgatatgaaacagaagatgaagatgatgatgatgatgacgacgat
gatgatgatgacgacgatgatgaagaggatgacagtgaagaagagagacacattggccgg
tcagacaaggagcatcgttcaaggaggcggaggcggagaggtgacgactacgatgatgat
gatgacgaggacgacgatgatgaggaagacagcgaggaacaggactttgaaggtgatgat
gatgagatggaagacttagatgatggaggagaggaagatgaagatgatgaggatggagag
aaccaatcagattctgatcctgacccacctgtcttactagtttccgacttgaatgatgac
ctgctgaacgactcttatctgactgtgaccctccagcgtcctccaaaggccaaacgtgac
cctggttctattgtacccaaacttgaggcggctatgtctccccgaacacctagcagtgct
ggcttcatccagcgcaaaacgctacccaggacccgactcaggaacaacacctcgacacca
gccggaaatggtctctctcagtccaaaagcggccacgcatccggccgccacacgaggcgg
agttccaaccaggacggtcgagagagagacacaccgtcaccatcttctatgtcttctcgt
tcctctgtttctccacctcctccacctccagccatctccacttcttcccctccttccctc
ctctctcatccctcattccgtgatgtaggaaatgagcgtggctgtgaaaaggacatttgg
atgtcagtcttccgttacttggagcggactgacttggctgtgtgtatgagagtctgcaag
gcttggtacaagtggtgttgtgataagcgcttatggacacacatagatctgagtcgatgt
cggacactcggtcctcaagctctgtcagcgatcataaaactacaacctgtgacacttgac
ctctcctggacacaagtatcaaagaagcagattgcctggctcattcaccacctcccaagt
ttgaaagatctaataatgttaggttgttcgtcattatgcgtgtcagcattaagtacgcag
agctgtccgggtttgcgaatccttgacctgagctgggccatgggtgtcaaagattcgcaa
ttaaaagacctcattgtacagccaggcagtgaaagtcgtagtcggctgagaggtttgctc
actttgcgattggctggtttggatgtgaatgactccaccctgaagatgattgtcagacat
atgcctttattacgccggttagatttgtcccactgccagggactcacagaccagtccatc
aacctgctcaccgcaaccggctgcaacactcgcaacacactcagacagctcaatctttca
ggttgtaataagttgacagatgcttgtctgtcctatatgaagcgactatcagctctggct
ctgttggatctgaggggctgtaggaacgtgactcgacgcggctgtgaaaacttcatttct
gacttgtcctactgcaccatattttgtctgaccgaggacagactcattcagagaatatcg
taa
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