Garra rufa (doctor fish): 141336563
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Entry
141336563 CDS
T11039
Symbol
smcr8b
Name
(RefSeq) guanine nucleotide exchange protein smcr8b
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
grf Garra rufa (doctor fish)
Pathway
grf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141336563 (smcr8b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141336563 (smcr8b)
Membrane trafficking [BR:
grf04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
141336563 (smcr8b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
Motif
Other DBs
NCBI-GeneID:
141336563
NCBI-ProteinID:
XP_073698347
LinkDB
All DBs
Position
6:46063318..46069299
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AA seq
974 aa
AA seq
DB search
MISSPDLVAFTKETDFGEIVKDTSALPEELSVPMYPYTGNTTPWSKMSGANFKKDFILLS
EFSEQVGPQPLLTVPSETKACGTFDLNHFSLRIMSVDYQTSLAGPSGCGSLKLNFVEDSK
VVLGDSGEGVFAYVHHFTLYDLEARGFVRPLCLAYVSSDENKIIQQLQQLLAEFSKISEC
LKTGNRKNFANELEIKLRDLEYTRVVLLREIEKELNNASVMCANEKAMLNGTPTLEDVKL
KEKLQKDRCEISRKVEVECEKGNGSCITRDRDELFGEQRKNKQDKGSCPTPLANKGDELA
SVEKSIQEYRSLLKQVTSYPTRKLRDSEYSPYEPDDLPHSFEFDLDDLRHEPMIECNVFA
CTNTLPLHSLQSSPCRFEKRLKTLEELCDDYFHQQALQQLYSIERKFRGDACHLYSQKLF
RNLLRNLKSTNFLFEDPCDLEEEAGLQIGIAGQHSARQPSFLPAPSILSEPVSLESYVSC
VEMVPIKLEFGGSSQSPAVPNCVNTPSEDNLPVTSAVETGMENGIVSPLDCRENKEHVSP
LMKTSISSGDSIEVLGTEKSFRSQGSNIPVDTALQRPPPLFASAALEGLRQGRVPTRRTC
SEDSIEVLCTTESILAEDLRACAIDEESLEQETDEKDMPQNQKDKQVEGVYRISGDHGGD
TCLEEPQDFYPAVTLTLPGCPMTLTLARSSSQDACRPSELIPLPLIDNCRLVPDDLSDCF
SYRSTTASTTSECAFPACLPGNKREGGARRRRGKVGRAALQFLRQFPFGVHAVFSLLSGR
TLVVLGSEEAAVRRLVTALSVYMPHLSRYRDSIQPWTSMPLQLTDLLNWKLIGFNRMCCY
TYTNMPHCLGHYSRYLSILDVDQKTLRCPAYSGTLLNPLVEPRSHFKRGNTYFMFTQSVQ
SKLVTTAFLLTFSHGCHKPRRPRETTWTQCFHSELHRDDKKILNYLSELIKSHFMEVPPN
VLRFSYTTNSIFKL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgattagttctccagacttagtggctttcactaaagaaaccgatttcggtgaaatagtc
aaagacacgtcagcactcccagaggagctgtccgttcccatgtatccctacactgggaac
accaccccatggtccaaaatgtctggggctaattttaaaaaggactttatccttttatca
gagttttcagagcaagttgggccccagcctttgcttacggttccttctgaaaccaaggct
tgtgggacattcgatttgaaccacttctcccttcggattatgtcggtggactatcagacc
tcactcgccgggccgtcaggttgtggctcactgaaactgaactttgtagaagactcaaag
gtagttctaggggattctggagaaggagtgtttgcttatgtgcaccactttacactctat
gacttggaggctcgagggtttgtgcgacctctctgccttgcctacgtgtcgtctgatgag
aataaaatcatacagcaactccaacagcttttagcagagttttccaaaatctcagaatgt
ctaaaaacggggaacaggaagaactttgcaaatgaactggagataaaactgagagatctg
gagtatacaagagtcgtgttacttagagaaatcgaaaaagagttaaataatgcatctgta
atgtgcgccaatgaaaaggcaatgttgaatggtacacctactttagaagatgtgaaactg
aaagagaaattacaaaaagacagatgtgagatttcaagaaaggtggaagtagagtgtgaa
aaggggaatgggtcatgtattacacgtgatagagatgaactatttggagagcaaaggaag
aacaagcaggataaaggatcttgcccaacgccattggctaacaaaggtgacgaactggcc
agtgtagaaaaatccattcaggaatacagaagccttctgaaacaggtcactagctaccca
accaggaagcttagagactcggaatactctccttatgaaccagatgacctgcctcattct
ttcgagttcgacctggatgatttaaggcacgagccaatgatagaatgtaatgtttttgct
tgcacaaacaccttgcccttgcattccctgcagtcttcgccttgccgatttgaaaagcgt
ctgaaaactcttgaggagttgtgtgatgattacttccaccaacaggctctacagcaactg
tattccatcgagaggaagttcagaggagatgcttgccatctctactcacagaaactcttc
cgtaatcttctccgcaacctcaaatctaccaatttcttatttgaggatccatgtgacttg
gaagaggaagcggggttacagattggaatagctggtcaacattcagcccgacaaccctcc
tttcttcccgcaccttcaattctaagtgaaccggtcagtctcgagtcgtatgtctcctgt
gttgaaatggtgccaattaaactagagttcggtgggtctagtcaatctccggctgtgccc
aactgtgtaaataccccttctgaggataatctacctgtaacatctgcagtagagactgga
atggaaaatgggattgtttcacctttggattgccgagaaaataaggaacatgtttcaccg
ttgatgaagaccagtattagtagtggagatagtattgaggtcttaggtacagagaagtcc
ttcagatcccagggttcaaatataccagtggacacagcactccaaagacctccacctttg
ttcgcttcagccgcactggaaggtctaaggcaagggagggtacctaccagacggacttgc
agtgaagacagcattgaggtgctttgcacaacagaatccatcctagcagaagacctgcgt
gcttgtgcaattgacgaggaaagcctggagcaagagactgatgagaaagacatgcctcaa
aaccaaaaggacaaacaagttgagggcgtttacaggatctctggagatcatggaggagat
acctgtttggaggagccacaagatttttatcctgctgttaccctaacccttcctggctgt
cctatgactttgaccctggctcggtcaagctcccaagatgcttgtcgtccatcagaatta
atccctctcccgttaatagataactgccggctagtgcctgatgatttgtcggactgcttc
agctatcggagcaccactgcctctacaacctctgaatgcgctttccctgcttgtcttcct
gggaataaaagagaaggtggggccagacggagacgtggaaaagtagggcgagcagcactg
cagttcttgcgacagtttccctttggagtgcatgcagtgtttagccttctgagtggccga
actttggtggtactaggcagcgaggaggctgcagtgagacgactggttacagcactgtct
gtgtacatgccacatctgagtaggtacagagacagcattcaaccttggacttcaatgccg
ctgcagctaacggacctgcttaactggaaacttatcgggtttaacaggatgtgctgttac
acttacacaaatatgcctcactgcctgggccattacagccgatacctcagcattctcgat
gtggatcaaaagacactgcgctgcccagcctacagcggtactcttctcaacccactggtg
gaacccaggagccactttaaacgtggaaacacctacttcatgttcactcaaagtgtgcaa
agcaagcttgtcaccacagcgttccttttaacattttcacatggctgccataaacccaga
aggcctcgggaaactacatggacacaatgttttcattctgaacttcacagagacgataag
aaaatcctcaactatttatctgaactcattaaatcgcacttcatggaggttccacccaat
gtcctcagattcagctacaccacaaactctatttttaaactctga
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