Garra rufa (doctor fish): 141337356
Help
Entry
141337356 CDS
T11039
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
141337356 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141337356 (lig4)
Enzymes [BR:
grf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141337356 (lig4)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
141337356 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
141337356
NCBI-ProteinID:
XP_073699256
LinkDB
All DBs
Position
6:complement(27831218..27835535)
Genome browser
AA seq
909 aa
AA seq
DB search
MDGASKSDATPQKSVAAQVPFIDLCTVLENIQKTKLRPDKGKILKDFIDSWRKFHAALHK
DNSNTTDSFYAAMRLIVPQFERERMAYGIKENMLAKLYIEVLGLPKNGTEANKLLNYRAP
TTSHGEAGDFALTAYFVLKKRCTSQGNLTIKEVNDFLDSVAINNASKQKDQVKKSLLHLI
TQSSALEQKWLIRMLLKDMKLGISKETVLQVFHPDAPELYNVTTDLNKVCTKLHDPSVSL
SEVSIDLFSAFKPMLAAVANVRQIEKQMGNRPFYIETKLDGERIQLHKAGDVYKYYTRNS
YEYTQQFGASPLEGSLTPYIHNVFKPNVVNCILDGEMMAYNPTTETFMQKGSKFDIKRLM
DDSDLQTCFCVFDVLLVNNQKFANEPLKKRYEILETVFTPVKGRIQMVTKADGKTMQEVV
NSLNEAIDNLDEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYNKNNPP
AAILCGTEKPEVYIEPRNSVILQVKAAEIVSSDMYKTNCTLRFPRIERIREDKEWHQCMT
LAELSQFRSRASGKLASRHLHIQDDQPEKKKQKFAAKPKKTIGVIDHFKSQDLSAVTKET
DMFEDVEFCVINGNDEHSKAELEKVVARCGGIVVQNPGKDTYCVIAAVQNMRVKNLISSD
QHDVVWATWLLECLENKQVIPWQPRHMIHMSPSTRDHFAKEYDQYGDSYYIDTDEQQLRE
VFERVGHTDAECLSVAQIEAENAWDDLPTSIFRPYTAYFDRCADLGDPKSIIRGTSLDTR
ALEFRFHGGKVVEKLKEGISHVIVENERRALDLKTLRRLYTKKFKIVRESWVTDSIKAGH
VEDEIDYLI
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgcctcaaaaagtgatgccacaccacagaagtctgttgctgcccaagttcca
ttcatcgacctctgcacagtcctggagaacatccaaaagaccaaactcagaccagacaaa
ggcaaaattctaaaggattttatcgattcttggaggaaattccatgcagcgcttcacaag
gacaattccaataccacagattcattttacgcagccatgcgtcttattgtgcctcagttt
gagcgagagcgaatggcttatggtataaaagaaaacatgcttgccaaactgtatattgaa
gttttaggcctacctaaaaatggaactgaggcaaacaaacttctaaattacagagctcca
accacatctcatggagaagctggtgactttgcccttacagcctactttgtgctgaaaaaa
agatgtacaagtcagggtaatttaaccattaaagaagtcaatgacttcttggattccgta
gctatcaacaatgccagcaaacagaaggatcaagtgaagaaaagccttttgcatctgata
acccagagttcagctttggaacagaagtggctcattagaatgcttctcaaggacatgaaa
cttggcattagcaaggagacagtacttcaggttttccatccagatgcaccagaactgtac
aatgtcaccacagacctgaataaagtctgcacaaaacttcatgatccgtctgtgtccctt
agtgaggtctccattgatttgttttctgcttttaaaccaatgctggccgctgttgccaac
gtcagacagatagagaagcaaatgggcaaccgtccattctacattgagacaaagcttgat
ggtgaacgcattcagctgcacaaagctggagatgtttacaaatactatacaaggaactct
tatgaatacacgcaacagtttggggcctctccactagagggctctctcacaccatacatt
cacaacgtcttcaaacctaatgtggtaaactgcatactggatggagagatgatggcttat
aatcctacaacggagaccttcatgcagaagggcagtaagtttgatattaaaaggctgatg
gatgactctgatttgcaaacctgcttttgtgtatttgatgtccttttagtaaacaatcag
aagtttgcaaatgaacctctcaagaagcgctatgaaattcttgaaactgtctttacgcca
gtcaaaggtcgtatccagatggtcacaaaagctgatggcaaaaccatgcaggaagtggtg
aattctctcaatgaggccattgacaatctggatgaggggattatggttaaggatcccatg
tccatctacaaaccagataaacgtggtgaaggatggttgaaaattaagccagaatatgtg
gatggtctgatggatgaacttgatctgctgatagtgggaggctactggggtaaaggcaga
agaagcgggatgctctctcattttctgtgtgcggtagcagaggtgccgagtccaggggag
aagcccacagtgttccatactctctgccgcattggatcaggctacactatgaaagaactg
tacgaccttggtctgaagttggccaaacattggaaagtttacaacaaaaataatcctcca
gctgccatcttgtgtggaacagaaaaaccagaggtttacatagaaccacgcaactcagtg
atcttacaagtcaaagcggcagagatagtctctagtgatatgtataagaccaactgcaca
ttacgtttccccagaatcgaaagaatcagagaagacaaagagtggcatcagtgcatgacc
ttggctgaactgagccagttccgctccagagcttctggaaagctggcatccagacatcta
catatccaagatgaccagcctgaaaagaagaagcaaaagtttgcagccaagcccaagaag
acaatcggagtcattgaccacttcaaatctcaggatttatcagcagtcaccaaagagacg
gatatgtttgaagatgttgagttctgtgtgataaatggcaatgatgaacattccaaggca
gagcttgagaaagttgtggcccgctgtggaggcattgttgtgcagaaccctggaaaggac
acgtactgtgtgattgcagctgtgcagaacatgagagtaaagaacctcatctcctcagac
cagcatgatgtggtgtgggctacttggctgttggagtgtctggaaaataagcaggttata
ccatggcaaccacgtcacatgattcacatgtcaccttccacaagggaccacttcgctaaa
gagtatgatcagtatggagacagttattacattgacactgatgaacaacagctgagggaa
gtttttgaaagggttggccacacagatgctgaatgtttgtctgtggcacagatagaagca
gagaatgcttgggatgacttgcccactagcatttttaggccttacactgcatactttgac
cggtgtgctgacttgggagatccaaaatccatcatccggggtacaagtttggacactcgt
gccttagaattccgattccatggtggtaaagttgtggaaaaactaaaggaaggaatctca
catgtcatagtagaaaacgagagaagagctctggacttgaagacactgaggcgactttat
accaagaagttcaaaattgttcgagaatcttgggtgaccgattccatcaaagcaggccat
gtagaggatgagattgactaccttatttaa
DBGET
integrated database retrieval system
