Garra rufa (doctor fish): 141342295
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Entry
141342295 CDS
T11039
Symbol
setdb1b
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1-B
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf00310
Lysine degradation
grf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
141342295 (setdb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141342295 (setdb1b)
Enzymes [BR:
grf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
141342295 (setdb1b)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
141342295 (setdb1b)
Heterochromatin formation proteins
Other heterochromatin formation proteins
141342295 (setdb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_4
DUF5604
Tudor_5
SET
Pre-SET
MBD
Chromo_MORC2_6th
DUF4537
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-GeneID:
141342295
NCBI-ProteinID:
XP_073702820
LinkDB
All DBs
Position
9:complement(31062854..31089566)
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AA seq
1219 aa
AA seq
DB search
MEVDASLASGMEMELDPELEEELGVSLDELRKWIEEQVDSSDAVQQRKAQLEQLQEWVDQ
REKEVADMDALCSNASESVVQCEALVKEVYSNMGLVYRESSSEDEGGGRAKTSEVIEIDD
DDDDDVIAVGCVVPPKKVVTPAKDTAFKEASAAIQRTSQQVQNLAQSVNRTAPSSITPAK
AVAPPTQSHGALAVPAVFMSSGPRNAPTQPNPNLKQDNIKINMTLLGKKRTKTWHRGTLV
AIKQVGNNFKYKVKFENKGKSLLSGNHVAFDYHPTLERLFVGARVVARYKDGNQVWLYAG
VVAEMPNSKNRMRFLIFFDDGYASYVGLPELYPICRPLKKTWEDIEDASCRDFIEEYITS
YPNRPMVLLKPGQIIKTEWEGTWWKSRVEEVDGSLVKMLFLDDKRSEWIYRGSTRLEPMF
NLKMNTASSQEKKMAGQQRQRPNMGALRTKGPVVQYTSDNSASASASASASSRPVAPQIP
PARPVTAGPPQPSRTESPSLKSQMAKKSTGQIALQPRQAMTTDLQPKALIGTVHQTNTSR
LFLLQSGPVHTLTPITPAPHTLQTTVSTYTSERIPQEPSYQAPNDRLFYLTHNCTVECLK
RIRPTRHNLHRGRNPLLTPLLYEFRRMTARRRLNRKMSFHVIYKSPCGLSLRNMAEIQRY
LFQTHCDFIFLEMFCLDPYVLVDRRFQPQRPFYFIRDITGGREDIPLSCVNEIDNTPPPS
VAYSKERIPEDGVYINTSPDFLVGCDCTDGCRDKSKCSCHQLTLQATGCAPGGQINPSAG
YHHKRLDECLPTGIYECNKRCRCNPQMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIA
KGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESEAHCSDSEGSGV
DMSRVKLPASQHGKSATKMEERNSSTTGKSQDDSSEDSDDDKDEESNEDESDSSDDTFVK
DTYYSTSSVWRSYTTRRQAKGMKEESQDSKDGLNAPAGEDRKPPTMPEETGKSKVASWLT
SQSSTSANQSVKVEGGIKTEKKDVMTLSDSDDVQTISSGSDDNKERAKKTQAVVKRQVAV
KSTRGIALKSHSMMVKSGGGSAGGGGSGPSHGQGGGGVDSGPKNTRQFFDGEESCYIIDA
KLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSV
EGKELLCCCGSTECRGRLL
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atggaggtagatgccagtttggcctcagggatggagatggagttggatccagagttggag
gaggagttaggggtgtctttggacgagctgcgcaagtggattgaagagcaggtggacagc
agcgatgccgtgcagcagaggaaagctcagctggagcagctgcaggaatgggttgatcag
agggagaaagaggtcgctgatatggatgctctttgctccaatgcctcagagtctgtggtt
cagtgtgaagctctggtgaaggaagtgtacagtaatatgggtctagtttatcgtgagagc
agctcagaggatgagggaggaggcagagcaaaaacttcggaggtcatcgagattgatgat
gatgatgacgacgatgtcattgctgtgggatgtgtggttcctcccaaaaaggttgtaact
ccagctaaggacacagcgtttaaggaggcttcagctgctattcaaagaacatctcagcag
gtgcagaacctggcccagtctgtgaacagaacagccccatcgagtatcacaccagctaaa
gcagtggcacctcccacacaatcccatggtgctctggctgttcctgcagtgtttatgtcc
tcaggtccaaggaatgcacccactcaaccaaaccctaatttaaaacaggataatatcaag
atcaacatgacacttttgggtaaaaaacgaaccaagacatggcatcgtggaacacttgtt
gccatcaaacaagtggggaacaattttaagtacaaagtgaagtttgagaataaagggaag
agtcttctctctgggaaccacgtggcatttgattaccacccaacactggagaggctgttc
gttggtgcccgtgttgtcgccaggtacaaggatggcaatcaagtctggctctatgcaggc
gtagttgctgagatgcccaacagcaagaaccgtatgaggttcctgatctttttcgatgat
ggttatgcctcatatgtgggcctgcctgagctctacccaatctgtagaccattaaaaaag
acttgggaggatattgaggatgcatcatgcagagatttcattgaggagtacatcacgtcg
tatcccaacagacctatggtgctgttgaaaccaggacaaatcataaagaccgaatgggag
ggaacgtggtggaaaagccgtgtggaagaagtggatggcagccttgtcaaaatgcttttc
ctggatgataagcggagtgagtggatttatcgtgggtctacacggctagaacccatgttt
aatttgaaaatgaacacagctagcagtcaagagaagaaaatggctggccaacaaagacag
cggcctaatatgggagctttgaggacaaagggccctgttgtgcagtatactagtgacaac
agtgcttctgcttctgcttctgcttctgcttccagtcggcctgtagccccacaaatccca
ccagctcggccagtgactgctggacccccacagccttcccgcactgagagtcctagttta
aagagccaaatggctaaaaagagcactggtcagattgcactccagcctcgtcaggccatg
accactgaccttcagcccaaagcactaattggcactgttcaccaaactaatacctccagg
ctgtttcttctgcagtctggacctgtgcatacgttgacaccaatcacaccagccccacat
actttgcagacaactgtgtcgacttacacaagtgagcgtattcctcaggagccatcatac
caggctccgaatgacagactcttctaccttacacacaactgcacggtagagtgtctgaag
cgcatccggcccactcgtcacaacctgcatcgaggacgcaacccacttcttactccattg
ctctatgagtttcgccgcatgactgcccgcagacgccttaaccgtaagatgtcattccat
gtcatctacaagtccccgtgtggcttgagtctgagaaatatggcagaaatccagcgctac
cttttccagacacactgtgacttcatctttttggagatgttctgtctggacccctacgtg
ctggtggaccgtcgattccaaccccagagaccattctacttcatccgggacatcacaggc
ggtcgcgaagacattcccttgtcctgtgtgaatgagatcgacaacacccctccacccagt
gtggcttacagtaaagagaggatcccagaagatggagtctatataaacacaagcccagac
ttcctggtgggctgtgactgcactgacggctgcagagacaaatccaagtgttcgtgtcat
cagctgactctgcaggccactgggtgtgcgcccggtgggcagatcaaccccagcgctgga
taccatcacaagagactggatgagtgtctccctacagggatctatgaatgtaataagcgc
tgccgctgtaatccgcagatgtgcactaaccgtctggttcagcatggtttgcaggtccga
ctgcaactgtttaagacccaaaataagggctggggcattcgttgccttgatgacattgcc
aagggctcatttgtttgtatctatgcaggtaaaatcctgacagatgactttgccgataaa
gaaggtttggaaatgggtgatgaatactttgccaatcttgaccacattgagagtgtggag
aactttaaagaaggttacgagagtgaggcccactgctctgacagcgagggcagcggggta
gacatgagcagggttaaactacctgcttcccaacacggtaaatccgccaccaagatggag
gagcgtaacagcagcactactggcaaaagccaagatgattcatctgaagacagcgatgac
gacaaagatgaagagtctaacgaggatgagagcgacagctcagacgacacatttgtaaaa
gacacttattactccaccagctcagtgtggaggagctacaccacccgcagacaggccaag
ggaatgaaggaagagagtcaggacagtaaggatggactgaatgcgcccgcaggtgaggat
aggaagccacctacgatgccagaggagaccgggaagagtaaagtggcatcttggctcacc
agccagtcctctacttctgcaaatcagagcgtcaaagtggagggagggataaagacagag
aagaaggatgtaatgaccctctctgacagtgatgatgtgcaaactataagctcaggatca
gatgacaacaaggagagggcgaaaaagactcaggctgtggtgaagaggcaggtggcagtg
aagtccacacgtggcattgctttgaagtcccacagcatgatggtaaaaagtgggggtggg
agtgcaggaggaggtggctcaggcccatctcatggacagggaggtggtggggtcgacagt
ggccctaaaaacacccgccagttctttgatggggaggaatcttgttatatcattgatgcc
aaactggagggaaacctcggacgctacctcaaccatagctgcagccccaatctgttcgtc
cagaatgtgtttgtggatactcatgatctccgcttcccctgggtggccttctttgctagc
aagcgaatccgagcagggacggagctaacgtgggattataattatgaagttggcagcgtg
gagggcaaggagcttctgtgctgctgtggatcaacagaatgcagaggacgactgctgtaa
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