Garra rufa (doctor fish): 141348672 Help Entry 141348672         CDS       T11039                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism grf  Garra rufa (doctor fish) Pathway grf04115   p53 signaling pathway grf04145   Phagosome grf04148   Efferocytosis grf04350   TGF-beta signaling pathway grf04510   Focal adhesion grf04512   ECM-receptor interaction grf04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:grf00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     141348672 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     141348672 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     141348672 (thbs1b)    04148 Efferocytosis     141348672 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     141348672 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     141348672 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     141348672 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:grf04131]     141348672 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:grf00536]     141348672 (thbs1b) Membrane trafficking [BR:grf04131]  Endocytosis   Phagocytosis    Opsonins     141348672 (thbs1b) Glycosaminoglycan binding proteins [BR:grf00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    141348672 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 Laminin_G_3 TSP1_ADAMTS cEGF EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  141348672 NCBI-ProteinID:  XP_073709050 LinkDB All DBs Position 13:complement(26195009..26206736) Genome browser AA seq 1171 aa AA seqDB search MKSTAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLVNFKQFKHTRGSLLTVEKKDGSGPIFEIVS NGKANTLDIFFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA SIQTILTQETPGVARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAIQRNKGCQNSIMTDII TLDNPINGSRPAIRTDYTGHKTKDLQMICGFSCEDLAAMFKELKGLGVVVQELSNELRKV TDEKDLLMTRLSIQTGVCLHNGIMHKNKEEWTVDDCTECTCQNSATVCRKISCPLIPCAN ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEGR QTEKCEKSSCPINGGWGPWSPWDACSATCGGGVQNRKRLCNNPVPMHGGKDCVGDAKASQ LCNKQACPIDGCLSNPCFQGAQCTSFPDGSWKCGKCPTGYTGNGINCKDINECKEVPDAC FEFNGVHRCENTVPGYNCLPCPSRYNGPQPFGRGVEDAASKKQVCTPRNPCLDGSHDCNK NARCNYLGHFADPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCP NLPNSGQEDYDKDGVGDACDNDDDDDGIPDDRDNCPLIFNPRQYDYDRDDVGDRCDNCPY SSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDLDGVGDQCDNCPLE HNPDQVDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDD NDGIPDEKDNCRLVPNADQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFDISETDFRK FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY DKTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgaagtcaactgcaatctttttgctactgatgctttggaactgcgagagcgccagagtc gcagaaagccgagacgacaacagcgtttacgatctgtttgagctggtccaagtgccgagg aaaaaccacggggtgactctggtgaaaggcgacgacccgtacagccccgcctacaagatt ctgaaccccgacctgattcccccggttcccgagagcgccttcagggacctaatcgattcc attcacgctgagagaggatttctcctcctggtcaatttcaagcagttcaaacacacgagg ggaagccttctgaccgtagaaaagaaagatggctcaggacccatcttcgaaatcgtttcg aacgggaaagccaacactctggacatttttttttccactgaaaacaagcaacaggtcgtg tccatcgaggaagcggatttggcagtgggacactggaaaaacatcactctattcgtgcag gaggacagggttcagttctatgtgggatgtgaggaggtgaatacagcggagctcgatgct tcaatccagactatcctcactcaggagactccaggtgtggcgagactgaggatcggcaag ggcgcagtgaaggacaggttcatgggggtgttgcaaaacgtgcgctttgtgtttggaacg acactggaagcaattcagaggaataaaggatgccaaaactcaattatgactgatatcatc acccttgacaatcccataaatggatccagacctgcaatcaggactgattacactggccac aaaacaaaagatctgcagatgatttgtggcttttcgtgtgaggacctggctgccatgttc aaggaactgaaaggtcttggtgttgtggtgcaagagctgtccaatgaactccgcaaagtg acggatgagaaagacttgctcatgactcgcttgagcattcaaactggtgtctgtcttcac aatggaattatgcacaaaaacaaggaggagtggacagtggacgattgcacagagtgcact tgccagaactctgcaacggtgtgccgcaagatttcatgtcccctaatcccatgcgcaaac gccacagtgcctgatggggagtgctgccctcgatgtggaaccccgagcgactccgctgag gatggctggtccccctggtctgaatggacccattgttctgtgtcctgtggaaggggcatt cagcagcgcggccgctcctgcgaccgcatcaataacaactgcgagggcacatcggtgcag accagagactgctaccttcaggagtgtgacaagcgctttaagcaggatggcagctggagt cactggtcaccctggtcttcctgctcggtcacctgcggcgctggtgttatcacacgtatc cgtctctgcaactctccaacacctcaaatggaaggcaaagactgccagggcgagggtcgg caaacagagaagtgtgagaaatcatcatgtccgatcaatggtggctggggaccatggtca ccctgggatgcttgctctgccacctgcggcggtggcgtccaaaaccgcaaacgtctttgc aacaacccagtacccatgcatggcggcaaagactgtgtgggagatgcaaaagccagccag ctttgcaacaaacaagcctgtccaatcgatggatgcctttcaaatccatgctttcaagga gcgcagtgtacaagctttcccgatggctcctggaaatgtggaaaatgccccacgggatac actggaaatggaatcaactgcaaggatatcaatgagtgtaaggaagtccctgacgcctgc tttgaatttaatggagtccacagatgtgagaacactgttccaggctacaactgcctgcca tgcccctctcgctacaacggcccacagccattcggtcgaggagtggaggacgctgcttct aagaaacaggtgtgcacacctcgtaatccctgcctcgatggaagtcacgattgcaataag aacgctcgttgcaactacctgggccatttcgcagaccccatgttccgctgtgaatgcaaa cctggctttgctggaaatggacacatctgtggagaggacactgatcttgatggctggccc aatgctgatcttgtgtgcgttgagaacgcaacctatcactgcaagaaggacaattgtccc aatcttcccaactctggccaagaggactatgacaaggatggagtcggcgatgcttgtgat aatgacgatgacgacgatggcattcctgatgacagggacaactgcccactcatcttcaac ccaaggcagtacgactatgatcgcgatgatgtaggagaccgctgcgataactgtccgtac agcagcaacccagaccagaccgacactgacaacaatggggaaggtgacgcctgtgctgtg gacattgatggagatggtattttgaatgagaatgacaactgcccgtatctgtacaacgtc gaccagaaagacaccgatctggatggagttggcgaccagtgtgacaactgccctctggaa cacaacccagaccaggtcgactctgattctgaccgtgtcggagacaaatgcgacagcaac caggatatcgatgaggacggtcaccaaaacaacctggacaactgcccgtacatccctaat gctaaccaggctgatcacgacaaggatggtaaaggagacgcttgcgactacgatgatgat aatgacggcatccctgatgagaaagacaactgtagattggttcccaatgcggatcaactg gattctgatggtgatggacgtggcgatgcctgtaaagatgactttgaccaggacaatgtc ttagatatctatgatgtctgtcctgagaactttgacatcagtgaaaccgacttccgcaag ttccagatggttcctctggatcccaagggcacttctcagatcgaccccaactgggtggtt cgtcaccaaggcaaagaactggttcagacagtcaactgcgatcctggcattgctgttggt tttgatgagttcaattcagtcgacttcagcggaacattcttcatcaacactgagagggac gacgactacgccggcttcgttttcggataccagtccagctctcgcttctacgtggtcatg tggaagcaaatcacacagacctactggtccagcacaccaaccaaggcacagggttactca gggctgtcaatcaaagtggttaactccaccacagggccaggcgagcatctgagaaacgcc ctctggcacaccggagacactccaggacaggtgcgcacactgtggcatgacccaaagaac ataggatggaaagacttcactgcttacagatggcacttgactcatagaccaagaactgga cacataagagtggtcatgtatgaaggcaaaaagatcatggcagattctggaagaatttat gacaagacatacgcaggtggaagactgggtctcttcgtcttctcacaagagatggtgtac ttctcagacctcaaatatgaatgcagagatgcgtaa

DBGET integrated database retrieval system