Christiangramia salexigens: LPB144_00535
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Entry
LPB144_00535 CDS
T04586
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
grl
Christiangramia salexigens
Pathway
grl03030
DNA replication
grl03410
Base excision repair
grl03420
Nucleotide excision repair
grl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
grl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB144_00535
03410 Base excision repair
LPB144_00535
03420 Nucleotide excision repair
LPB144_00535
03430 Mismatch repair
LPB144_00535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
grl03032
]
LPB144_00535
03400 DNA repair and recombination proteins [BR:
grl03400
]
LPB144_00535
Enzymes [BR:
grl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPB144_00535
DNA replication proteins [BR:
grl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB144_00535
DNA repair and recombination proteins [BR:
grl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPB144_00535
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB144_00535
MMR (mismatch excision repair)
DNA ligase
LPB144_00535
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB144_00535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
Auto_anti-p27
Mig-14
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
APG58979
UniProt:
A0A1L3J1I7
LinkDB
All DBs
Position
105342..107339
Genome browser
AA seq
665 aa
AA seq
DB search
MDIELKIKELREELQKHNYNYYVLDKPEISDYDFDMKLEELQKLEEQNPQFRDENSPTQR
VGGAITKNFATVEHEFRMYSLSNSYSKEELEEWENRIRKVVDGEVKYVCELKYDGASISL
TYENGSLIKAVTRGDGFQGDDVTNNVRTIRSVPLKLKGDYPEKFHIRGEIVLPYEGFAQM
NAERVDLGEEPYANPRNTASGSLKLQDSAEVARRPLECLLYSITGNNTGITSQYEVLEKA
RSWGFKVPAESELKNSIEEVLEYINYWDHHRHDLPYETDGVVIKVDNIHQQEELGHTAKS
PRWAMAYKFKAEQESTKLKKITYQVGRTGAITPVANLAPVQLAGTTVKRASLHNADQIEK
LDVREGDTVFVEKGGEIIPKIVGVDFTKRDPDSEPTSYAANCPECGTELIRNKGEAQHYC
PNTNGCPPQIIGRIQHYISRKAMDIEGLGGETVALLVKAGLIENYADLYTLKKEDVLPLE
RMAEKSADNLIKGIENSKAIPFERVLFALGIRYVGETVAKKLAKHFKNIDSIMSATEEEL
VNLDEIGERIAWSVVDFFSNKANRENVSRLKEYGIQLEISAEKLANQTNILEGKIFVISG
VFNQVSRNDAKKLIEDNGGKVSGSISSKTNYLVAGENMGPSKLAKAEKLGTQIISEDDFL
KMLEN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatatagaattaaagataaaagagcttcgggaagaactacaaaaacataattacaat
tattatgttcttgataagccggaaataagtgattacgattttgatatgaagcttgaagag
cttcagaagctggaggagcaaaaccctcagttcagggatgagaattcaccaactcaacga
gttggcggagcgatcactaagaatttcgcgacagtagagcatgaattcagaatgtattcc
ttgtccaattcttattcaaaagaggagcttgaggagtgggagaataggattagaaaggtt
gttgatggtgaggtgaaatatgtttgtgagcttaaatacgacggggcgtctataagtctt
acatatgaaaatggaagtctgattaaagcagtgacccggggagatgggtttcagggtgat
gatgtgactaataatgttcgtacaatacgatctgtgcctttaaaacttaaaggtgattat
cctgaaaagtttcatataagaggtgagatcgtgctgccctatgaaggttttgctcaaatg
aatgcagagcgggtggaccttggcgaagagccttatgcgaatccaagaaatactgcatcg
ggtagcttaaaattgcaggatagtgctgaggtggccagaagaccattggaatgtttactt
tatagtatcaccggaaataataccgggatcacgtcgcagtatgaggtcttggaaaaagca
agaagctggggatttaaagttccggctgaatctgaattgaaaaattctatagaagaagtt
ctggaatatatcaattactgggatcatcacaggcacgatctgccatacgaaacagatggt
gtggtgatcaaagtggataatattcatcaacaggaagaacttggacatacggcaaaatct
ccaagatgggcaatggcctataaattcaaggcagagcaggaaagtacaaaattaaaaaag
atcacatatcaggtgggaaggaccggggcgatcactccggtggcgaatcttgcgcctgtt
caattggccggaactacagtgaaaagagcttctctccataatgccgaccagatcgaaaaa
ctagatgtgcgggaaggtgatactgttttcgttgaaaaagggggcgagatcatacctaag
atcgtaggtgtggattttactaaaagagatccggactcggagcctacgagttacgccgcg
aactgtcctgaatgtggaacagaacttataaggaataaaggtgaggctcagcattattgc
cctaataccaatgggtgtcctccgcagattattggccgtattcagcattatatatcaaga
aaagcaatggatattgagggacttggaggtgaaacggtggctttgctggtaaaagccggg
cttatagaaaattatgcagatctctatacgcttaaaaaggaagatgtattaccgcttgag
cgtatggctgaaaaatctgcagataatcttattaaagggatagagaattctaaagcaatc
ccatttgaaagagtgttgtttgcactcggaattcgctatgtaggtgaaacggtagctaag
aaacttgctaagcattttaagaatatagattccattatgtcggcaactgaagaagagctg
gtgaatctggatgaaattggagaaaggattgcctggagtgtagtagactttttcagcaac
aaagcgaatcgtgaaaatgtatctcgactaaaggaatacggtattcagcttgaaatttcg
gcggaaaaactcgcaaatcaaaccaatattctggaaggtaaaattttcgttatttcgggg
gtgtttaaccaggtttcaaggaatgatgccaaaaagctcatagaagataatggaggtaag
gtttccggttctatttcttcaaaaaccaattatctggttgccggtgaaaatatgggacca
agtaaacttgcgaaagctgaaaaattgggaacgcagatcattagtgaggatgatttcctg
aaaatgctggaaaactaa
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