Gordonia rubripertincta: GCWB2_16905
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Entry
GCWB2_16905 CDS
T05629
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gru
Gordonia rubripertincta
Pathway
gru03030
DNA replication
gru03410
Base excision repair
gru03420
Nucleotide excision repair
gru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCWB2_16905 (ligA)
03410 Base excision repair
GCWB2_16905 (ligA)
03420 Nucleotide excision repair
GCWB2_16905 (ligA)
03430 Mismatch repair
GCWB2_16905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gru03032
]
GCWB2_16905 (ligA)
03400 DNA repair and recombination proteins [BR:
gru03400
]
GCWB2_16905 (ligA)
Enzymes [BR:
gru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GCWB2_16905 (ligA)
DNA replication proteins [BR:
gru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GCWB2_16905 (ligA)
DNA repair and recombination proteins [BR:
gru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GCWB2_16905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCWB2_16905 (ligA)
MMR (mismatch excision repair)
DNA ligase
GCWB2_16905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GCWB2_16905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
HHH_3
Zn_ribbon_TFIIB
DUF4796_N
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ASR04161
LinkDB
All DBs
Position
complement(3693645..3695735)
Genome browser
AA seq
696 aa
AA seq
DB search
MAETTESERPATEQSGPEGDLREQWTELAEEIREHQFRYYVKDAPVITDGEFDALLRRLQ
DLEERHPELATPDSPTKLVGGGFSTAFSPADHLERMMSLDNVFDYDEMTSWVERVNSDAG
VKAEFLCELKIDGVALALVYRNGVLERGVTRGDGRTGEDVSLNARTIEDIPQRLTASDEY
PIPDVLEVRGEVFFRVEDFEALNASLVADGKPPFANPRNSAAGSLRQKNPQVTARRRLRM
ICHGIGHTEGWRPASLHDAYLALGAWGLPVSTHTTKASDATEILDKISYWGEHRHDVEHE
IDGIVVKVDDFTLQRRLGSTSRAPRWAIAYKYPPEEATTKLRDIQVGVGRTGRVTPFAVL
EPVLVAGSTVSRATLHNGSEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGSEVEFE
MPERCPECGTPLRPEKESDVDVRCPNQESCPAQLRERLFHLAGRGSFDIEALGYEAATAL
LTAKVIRNEGDLFSITADDLARTELFTTKAGALSANGKRLLANLDKAKDVALWRVLVGLS
IRHVGPTAARALATEFGSLEAIESADVEQLANVEGLGMTLAQSIHDWFTVDWHREIVEKW
RAAGVSMEDQRDDSIARTLEGKTIVVTGSLVDFSRDGAKEAILQRGGKASGSVSKKTDYV
VVGDSPGSKADKAEQLGVPVLDEDAFKRLLETGSSD
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaaacaacggagtcggagcgcccggcgaccgagcagtcgggacccgagggagac
cttcgcgagcagtggaccgaactcgccgaggaaatccgcgagcatcagttccgctactac
gtgaaggatgcgccggtcatcaccgacggcgagttcgacgcgctcctccgacgcctgcag
gatctcgaggaacgccatcccgagctcgcaacccccgattcgccgaccaagctggtcggc
ggcggtttctccacggcattctccccggccgaccatctcgagcggatgatgtcgctggac
aacgtcttcgactatgacgagatgacctcgtgggtcgagcgcgtcaactccgacgccggc
gtcaaggccgagttcctctgtgaactcaagatcgacggggtcgcgctcgcgctggtgtac
cgcaacggtgtcctggaacgcggtgtcacccgcggggacgggcgcacgggcgaagacgtc
tcgctcaacgcccgcaccatcgaggacatcccgcagcgcctcaccgcctccgacgagtac
ccgatcccggacgtcctcgaggttcgcggcgaggtcttcttccgggtcgaggatttcgag
gcgctcaacgcatcgctggtggccgacggcaagccgcccttcgccaatccccgcaattcg
gcggccggctcgctgcggcagaagaatccgcaggtcacggcccgtcgcagactgcggatg
atctgtcacggcatcgggcacaccgagggctggcgaccagcatcgctgcacgacgcgtac
ctcgcgctgggtgcgtggggactccccgtgtcgacccacaccaccaaggcgtcggacgcc
accgagatcctggacaagatctcctactggggtgaacaccgccacgacgtcgagcacgaa
atcgacggcatcgtggtcaaggtcgacgacttcaccctgcagcgccgcctcggttccacc
tcgcgcgcgccgcgctgggcgatcgcgtacaagtacccgccggaggaggccaccaccaag
ctgcgcgacatccaggtcggcgtcggtcgcaccggccgcgtcacgcctttcgcggttctc
gaaccggtcctcgttgccgggtccaccgtgtcccgcgcgacccttcacaacggctcggag
gtcaagcgcaagggcgtgctcatcggcgacacggtgaccattcgcaaggccggcgacgtg
attcccgaggtgctcggtccggtcgtcgacctgcgcgacggctccgaggtcgagttcgag
atgcccgaacgctgcccggaatgcggtacgccgctgcgcccggagaaggaatccgacgtc
gacgtccggtgtccgaaccaggagagttgcccggcgcagttgcgggagcggctatttcat
ctcgccggtcgtggatccttcgatatcgaggctctcggttacgaggccgcgaccgcgctg
ctgacggcgaaagtgatccgcaacgagggcgacctgttctccatcaccgccgacgacctc
gcccgcacggaactgttcacgaccaaggccggcgcgttgtcggcgaacggcaaacgcctg
ctggccaacctcgacaaggccaaggacgtggcgttgtggcgagtgctggtgggtctgtcg
atccgccacgtcggtcctactgctgcgcgtgcgctggcgaccgaattcggttcgctggag
gccatcgaatccgccgacgtcgaacagttggcgaacgtcgaggggctcggtatgaccctc
gcgcagtcgatccacgactggttcaccgtggactggcatcgcgagatcgtcgagaagtgg
cgcgcggcaggcgtttccatggaggaccagcgcgacgactcgatcgcgcgaacgctcgag
ggcaagaccatcgtcgtgaccggatcgctggtggacttctcccgtgacggcgccaaagag
gcgatcctgcaacgcggtggcaaggcttcggggtcggtgtcgaagaagaccgactacgtg
gtcgtcggcgattcgccgggaagcaaggccgacaaggccgaacagctcggcgtcccggtc
ctcgacgaggacgcgttcaaacgactgctggagaccggcagttcggactag
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