Granulicella sp. WH15: FTO74_15735
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Entry
FTO74_15735 CDS
T06415
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
grw
Granulicella sp. WH15
Pathway
grw03030
DNA replication
grw03410
Base excision repair
grw03420
Nucleotide excision repair
grw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
grw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FTO74_15735 (ligA)
03410 Base excision repair
FTO74_15735 (ligA)
03420 Nucleotide excision repair
FTO74_15735 (ligA)
03430 Mismatch repair
FTO74_15735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
grw03032
]
FTO74_15735 (ligA)
03400 DNA repair and recombination proteins [BR:
grw03400
]
FTO74_15735 (ligA)
Enzymes [BR:
grw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FTO74_15735 (ligA)
DNA replication proteins [BR:
grw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FTO74_15735 (ligA)
DNA repair and recombination proteins [BR:
grw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FTO74_15735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FTO74_15735 (ligA)
MMR (mismatch excision repair)
DNA ligase
FTO74_15735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FTO74_15735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
MutL
5_3_exonuc
DUF3969
HMBD
P66_CC
Motif
Other DBs
NCBI-ProteinID:
QHN04652
UniProt:
A0A7L5ACG5
LinkDB
All DBs
Position
complement(3819845..3821950)
Genome browser
AA seq
701 aa
AA seq
DB search
MADGHHTVEQKIEKLREELRHHEHLYYVEDAPVLTDAQYDELMRRLKALEEEHPELVTPD
SPTQRVGGKPKDGFVKTPHSRPMLSLDNAFDEAELRAWDARVRGGLPPSETVGYVCELKL
DGLSLALQYSGEANGSAHLVSGITRGDGTIGENVTTNVRTVRSIPLSISAARMKSAGVDG
GFEVRGEVLLSQAAFEKLNEEREAAGLAPAANPRNAAAGTVRTLEPNIVAQRRLDFYAYF
LLRDGEFLMPTQTETLSALRALGFLVNKHARTVADIDGVIEFIAGADALRDSLPYEIDGV
VVKVDSTAQQRRLGFTGKAPRWAIAYKFPARAAVTLLENVTFQVGRTGKVTPVANLRPVS
IGGTVVKRATLHNADEIERLGVRIGDHVSVERGGDVIPKITGVVLDKPRGEGVIEFPETC
PECGTALVKVEGEVDWRCVNASCPARLREELLHFGSRGVMNIEGLGEVMVAQLLGQKLSE
VVPEDSELEDAAEVVREPLVRSLADIYWLKKEQLLELERVGDKSSQALLDEIERSKTRPL
AKVLLGLGIRFVGERTAELLASHFGSMDALMEATAEELTKVNEVGPKVAEGVVEFFAELR
NRALVEKLREAGLTMPAEKKVTSDVLAGLTFVLTGTLPTLTREAAKEKIEAAGGRVSGSV
SKKTSYVVAGEEAGSKLEKANELGVKVVDEAGLLELLEAKD
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgggcaccacacggtcgagcagaagattgagaagctgagggaagagctgcgt
caccacgagcatctgtactacgtcgaggacgcgccggtactgacggacgcgcagtacgac
gagctgatgcggcggctgaaggcgctcgaggaggagcatcctgagctggtgacgccggat
tcgccgacgcagcgcgtgggcggcaagcctaaggacgggttcgtgaagacgccgcactcg
cggccgatgctgtctctggacaacgcctttgatgaggccgagctgcgggcttgggatgcg
cgggtgcgaggtgggttgccgccgtccgagacggtgggctacgtctgtgagctgaagctg
gatgggctctcgctggcgctgcaatatagcggcgaggccaatggctcagcgcacctggtg
agcggaatcacccgtggtgacgggacgattggggaaaatgtaaccacaaatgttcggacg
gtgcgctcgattccgctgagcatctcggcggcgcggatgaagagcgcaggagtagacggc
ggtttcgaggtgcggggcgaggtgctgctgtcgcaggcggccttcgagaagctgaacgag
gagcgcgaggccgcgggactggctccggcggcgaacccgcgcaacgccgcggcgggcacg
gtgcggacgcttgagccgaacatcgtggcgcagcgtcggttggacttttacgcatacttt
ctgctgcgggatggcgagttcttgatgccgacccagaccgagacgctgtcggcgctgcgg
gctctgggctttctcgtgaacaagcacgcgcggacggttgcggatatcgatggggtgatc
gagtttatcgccggtgcggatgcgctgcgcgactcgctgccgtacgagatagacggcgtg
gtggtgaaggtggattcgaccgcgcagcagcggcggctgggctttacgggcaaggctccg
cgctgggcgattgcttataagtttccggcgcgggctgccgttacgttgctggagaatgtc
acgtttcaagtggggcgcacgggtaaggtaactcctgtggcgaaccttaggccggtctcg
atcggcggcacggtggtgaagcgtgcgactctgcataacgccgatgagatcgagcggctg
ggcgtgcggatcggtgaccatgtatcggtggagcgcggcggcgatgtgatcccgaagatc
accggcgtcgtgctggataagccgcgtggtgagggagtgatcgagtttccggagacgtgt
ccggagtgtggcaccgcgctggtgaaggtcgaaggtgaggttgattggcgctgcgtgaat
gcgagctgtccggcgcgtctgcgtgaggagttgctgcacttcggctcgcgcggcgtgatg
aatattgagggtctcggcgaggtgatggtggcccagttgctggggcagaagctctcggag
gttgtgccggaggactccgagttggaggacgctgccgaggtggtgcgcgagccgctggtg
cggtcgctggccgatatctactggctgaagaaggagcagttgctcgagctggagcgagtg
ggcgataagagctcccaggcactgctcgatgagattgagcggtcgaagacgcggcctctg
gccaaggtgctgctggggctggggattcgctttgtcggcgagcggactgcggagttgctg
gcctcgcactttgggtcgatggatgccctgatggaggcgacggcggaggagctgaccaag
gtgaacgaggtcgggccgaaggtcgctgagggcgtggtcgagtttttcgctgagcttcgg
aatcgcgcgctggtggagaagttgcgcgaggccgggttgacgatgcctgcggagaagaag
gtgacgtccgacgtgctggcggggctgacatttgtgctgaccgggacgctgcccacgctg
acgcgggaggcggcgaaggagaagatcgaggctgcgggcgggcgggtctccggctcggtg
agcaagaagaccagctacgtggtggcaggcgaagaggctggctcgaagctggagaaggcg
aatgagctgggggtgaaggtggtggatgaggcggggttgctggagttgctagaggcaaaa
gactag
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