Gulosibacter sediminis: M3M28_02895
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Entry
M3M28_02895 CDS
T08132
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gsd
Gulosibacter sediminis
Pathway
gsd03030
DNA replication
gsd03410
Base excision repair
gsd03420
Nucleotide excision repair
gsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M3M28_02895 (ligA)
03410 Base excision repair
M3M28_02895 (ligA)
03420 Nucleotide excision repair
M3M28_02895 (ligA)
03430 Mismatch repair
M3M28_02895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsd03032
]
M3M28_02895 (ligA)
03400 DNA repair and recombination proteins [BR:
gsd03400
]
M3M28_02895 (ligA)
Enzymes [BR:
gsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M3M28_02895 (ligA)
DNA replication proteins [BR:
gsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M3M28_02895 (ligA)
DNA repair and recombination proteins [BR:
gsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M3M28_02895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M3M28_02895 (ligA)
MMR (mismatch excision repair)
DNA ligase
M3M28_02895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M3M28_02895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
TMP_2
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
UQN15432
UniProt:
A0ABY4MZD6
LinkDB
All DBs
Position
657474..659786
Genome browser
AA seq
770 aa
AA seq
DB search
MADRDPALEFDEAREEADRLADQLTQWSAAYYEGDTQLVTDAEYDAAMARLRELEAQFPE
LQSQDSPTQVVGGGASSLFAEVTHRERMLSLDNVFSVDELRTWLGRTGEAAGGTVRWLSE
VKIDGLAISLTYERGALTIAATRGDGRTGEDVTENIADIAAIPQQLTGEGIPELVEVRGE
VFFRVDDFRALNAEQAEAGEPLFANPRNAASGSLRQKREGKTGTKLDLMRRRLGRLSMYV
HGIGAWEQGANASPRLENQSDYYELFASWGLPTSPHTRVLDSADAVVDYVAEYGERRASI
EHELDGIVVKVDNLAQHDELGATSRAPRWAIAYKYPPEEVHTKLIDVRVGVGRTGRVTPY
AVMEPVRVAGSTVTFATLHNQDVVVAKGVLIGDTVVLRKAGDVIPEVLGPVLAERPDDAR
PFEMPTVCPECGTELRAMKEGDVDLRCPNARSCPAQVRGRVEHIGSRSGLDIEVLGEVTA
AALTQPDEPETPPLVTEASLFDLTLDELVPIVVTVRDADTGEPKVDADGTPRRRTPFRVV
KSKTYAPEAEGMTAAERRKAGFKKDVPVYGASTQAQKLLDELEKAKTKELWRLLVSLNIR
HVGPVAARALADWFGSLDAIRAASVEELSAVEGVGPIIAESIAEWLQVDWHLEIVDRWTA
AGVQWATPGHPGPGAKEDIEGPLTGLTVVATGTLEGFTREGAKEAIIAAGGKAASSVSKK
TDFVAAGPGAGSKLTKAEELGIPVLDADGFRLLLDGGPDAVAGLAADADA
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccgcgatcccgctctggaattcgacgaggctcgcgaggaggctgatcggctc
gccgatcagctcacccagtggtcggccgcgtactacgagggcgacacgcaactcgtcacc
gacgccgagtacgacgccgcgatggcgcgcctgcgcgagctcgaggcgcagttccccgag
ctgcagtcgcaagactcgccgacgcaggtcgtcggcggtggcgcctcctcgctcttcgcc
gaggtgacgcaccgcgaacggatgctctcgctcgacaacgtgttctcggtcgacgagctg
cgcacctggctcgggcgtaccggcgaggcggccggtggcacggtgcgctggctcagcgag
gtgaagatcgacgggctcgcgatttcgctcacctacgagcgaggcgccctgacgatcgcc
gcgacgcggggcgacgggcgcacgggtgaggacgtcaccgagaacattgccgacatcgcg
gcgatcccgcagcagctcaccggtgagggcattcccgagctcgtcgaggtgcggggcgag
gtgttcttccgcgtcgacgatttccgcgcgctcaatgccgaacaggccgaggcgggcgag
ccgctgttcgcgaatccccgcaacgccgcatccggctcgttgcggcagaagcgcgagggt
aagaccggcacgaagctcgacctcatgcgcaggcggctcggccgcctcagcatgtacgtg
cacggcatcggcgcgtgggagcagggcgcgaacgcgagcccgcgactcgagaatcagtcg
gactactacgagctcttcgcgagctggggcctgccgacgagcccgcacacgcgcgtgctc
gactcggcggatgcggtggtcgactacgtcgccgagtacggcgagcgccgagcctcgatc
gagcacgagctcgacggcatcgtcgtgaaggtcgacaacctcgcgcagcacgacgagctc
ggcgcgacctcgcgcgccccgcgctgggcgatcgcctacaaatacccacccgaagaggtg
cacacgaagctcatcgacgtgcgcgtcggcgtgggccgcaccggccgggtgaccccgtac
gccgtgatggagccggtgcgcgtcgccggctcgaccgtgacgttcgcgacgctgcacaac
caggatgtcgtggtggcgaagggcgtgctcatcggcgacaccgtcgtgctgcgcaaggcc
ggcgacgtgattcccgaggtgctcggcccggtgctcgcggagcggcccgacgacgctcgc
cccttcgagatgccgacggtgtgccccgagtgcggcaccgagctgcgcgcgatgaaagag
ggtgacgtcgacctgcgctgcccgaacgctcgcagctgcccggcgcaggtgcgcggccgc
gtcgagcacatcggttcacgctcgggcctcgacattgaggtactcggcgaggtgaccgcg
gcggcgctcacccaaccggatgaacccgagacaccgccgctcgtgaccgaggcctcgctg
tttgacctcacgctcgacgagctcgtgcccatcgtcgtgacagtgcgcgacgccgacacg
ggcgagccgaaggtggatgctgacgggacgccgcggcggcgcacgcctttccgcgtcgtc
aagtcgaagacctacgcgcccgaggccgagggcatgaccgcggccgagcgccgcaaggcc
gggttcaagaaggatgtgccggtgtacggcgcgtcgacgcaggcccagaagctgctcgac
gagctcgagaaggcgaagacgaaggagctgtggcgcctgctcgtgtcgctgaacatccgc
cacgtcgggccggttgcggcgcgcgcgctcgcggactggttcggttcgctcgacgcgatt
cgcgcggcctcggtcgaagagctgtcggccgtcgagggtgttggcccgatcatcgccgaa
tccatcgccgagtggctccaggtcgactggcatctagagatcgtcgaccgctggaccgcc
gccggcgtgcagtgggcgacgcccggtcacccgggcccgggcgcgaaagaagacatcgag
ggcccgctcaccggcctcaccgtcgtcgcgaccggcacgctcgagggcttcacgcgcgag
ggcgcgaaggaggcgatcatcgctgcgggcggcaaggccgccagctcggtctcgaagaag
accgacttcgtcgctgcgggccccggcgcgggttcgaagctcacgaaggctgaagagctc
ggcatcccggtgctcgacgccgacggcttccgcctgctgctcgacggcggcccggatgcg
gtggcagggcttgctgccgacgccgacgcctga
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