Geotrypetes seraphini (Gaboon caecilian): 117345796
Help
Entry
117345796 CDS
T09159
Symbol
NPHS1
Name
(RefSeq) nephrin isoform X1
KO
K24496
nephrin
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
117345796 (NPHS1)
Domain-containing proteins not elsewhere classified [BR:
gsh04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
117345796 (NPHS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
C2-set_2
Ig_2
ig
V-set
fn3
C2-set_3
Ig_DSCAM-DSCAML_C
Sp38
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
117345796
NCBI-ProteinID:
XP_033770849
UniProt:
A0A6P8NJW8
LinkDB
All DBs
Position
11:125889012..126053178
Genome browser
AA seq
1269 aa
AA seq
DB search
MRKSGVRMAFDNTFILPVCILLGFLWRGSWSQQQAFRIQPDNVTVLEGGTAVLLCEIENP
SGVVQWVKDGLLLGPERTIPSFPRYTMTGDADKGENHLQIEGCMLQDDADYKCQVGRSET
SYGIISRTVLVNVLIPPKKPRIEEYEANSVVTWVAGLEYSVTCSASDSKPPSDITFIKSG
SELSNVISHVISGSSEKLSSTQATVKVIPQSTDNGKLLECGAANPATLTLTVTSFILNVL
FPPLAPIIEGYNQPLVKAGEILKLRCISQGGNPLATLQWSKNESVISTNWETDDILRSSR
SLLSLNIKPEDNMVVLSCEALNQVTPIALKTSIALNVVFLPTEVTILGSASVQENKSISM
SCFTAASNPPVKIRWWLGWRELITTEVAITDASYGGKVTMSNLTHIVLREDNGLPLTCEA
FNEAILYTKTSSVTINVQYPPQKVWLETPPSDKYFRAGTPVKMTCFSSGGNPTPRLTWIK
ENKALRDGTQITSGKIVSKEIVIITAPNDNLATYRCNASNDAKTPALTTHTKLHIQFPAV
HVKISTTADDIRRGQSITLNCATGSSNPYSTVSWLKDGEKLKGVDLGRRNTEFGGVSTFS
KVTLVASSADNERRVTCQAYSAVLNEAVNTFYKLNILFPPEFSEQQLKVVQAVEYGAVLI
PLLVSANPTEITYTWSFRGEMLIREGAPKHHLRDGGSLEIWNLTRSDSGNYRIHCMNDEG
ENETTIKLDIQYSPSIKSIGDPTEVDIGGIAEIICIADANPVTPSMFQWKWLGDDERELD
SYEEVTHDATGKLIIRDAKRSDAGRYECSVDNGIAPSVKRDAKLIVRFKPEIQKGVHLSK
VAASGDGTSAAVLVCKAEGIPNVQFSWSKKGVALDPQSPRYSMKILHESSLHTSTLTIVN
VSAVLDYALFTCTATNPLGVDSFDIHLVSTSRPDPPTHLEVISFTHNSVTLAWSAGFDGG
LEQKFRVRYHWKEAPSFMYVDVFPPQATTFTITGLNPDTPYNFSVNAINVLGDSDYADGG
AVLTVTTQEKIMPEIWVTPGAPTLPQPEAFVLPLYLIAILSVAGGILILSNASFLVWFIR
KRCIHPVAGNAMKKGDSSLNEYGNGELINVGAKQTLLIDSTSERSSSLYESYEQDSSSDA
GLYYYPIRDYKPSLMVHHEMTEGETDDTQSFQGRALKSTWSDSLDPHEYDEVADYAVYEE
VGNPYPQSLTSTYAASTHWPDENFLGVYHQKGKSLAGLREPMRHYGNVAEFSPLSQDYEV
PFEMRGQLV
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaaatcgggggtgagaatggcttttgacaacacgtttatccttcctgtctgcatt
ctgcttggtttcctctggaggggctcatggtcccaacagcaggcattccgaatccagccg
gacaatgtgacagtgctggaaggaggcacagctgtattgttgtgtgagatagagaatcct
tctggggtggtccagtgggtaaaggacgggcttttgctaggacctgaaagaacaatccca
agcttccctcgctacactatgactggggatgctgataaaggagaaaatcacctacagata
gagggctgcatgttgcaggatgatgcagactataagtgtcaagttgggcgatcggagacc
agttatggaatcatctcccgcacagttctggtcaatgtgctcattcctccaaagaagcca
cgcatcgaagagtacgaggcaaacagtgtggtgacctgggtagcaggtttggaatacagc
gtgacctgcagtgcatctgactcaaaacctccctctgatatcacattcatcaaaagtggg
agtgaactctccaatgtgatatcccatgtcatatctggttccagtgagaagctatccagt
actcaggcaactgtgaaagtcatccctcaaagcactgataacggcaaactcctggagtgt
ggggccgcaaaccctgccactttgactctaacagtgaccagtttcatcctgaatgtgctg
ttcccaccactggcccccatcattgaaggttataatcagcccctggtaaaagctggagag
atccttaagctgagatgcatctcccaaggtgggaacccactagccaccctgcagtggtca
aagaatgaaagtgtcatttccactaactgggagacggatgacattctccggtcatcccgg
agcctcttgtctctgaatattaaaccagaagataacatggtagtgctgagctgtgaagca
ctcaaccaggtcactcctatagccctcaaaaccagcattgccttgaacgttgttttcctt
ccaacggaagtcacaattctgggctctgccagcgttcaagagaacaagagtatttccatg
tcctgtttcactgcagccagcaaccctccagtgaaaatccgctggtggctgggctggcga
gagctcatcacaaccgaagtggccattacagatgcatcctacggagggaaggtgacaatg
tccaatctgacccacatagtcttgcgagaggacaatgggttgcccctaacctgtgaggcc
ttcaatgaggccatcttatataccaagacatcctctgtgactatcaatgtgcagtaccca
cctcaaaaagtgtggcttgagactccacccagtgataagtattttcgggcaggaacccca
gtgaagatgacgtgcttctccagtggtggaaaccccacccctcgacttacatggatcaag
gagaacaaggctctgagggacgggacccaaatcacatctgggaagattgtgtcaaaggag
attgtcatcatcacagctcccaatgacaacctagccacatatcgctgcaatgccagcaat
gatgccaaaactccagcactgaccacgcacacaaagcttcatatccagttcccagcagtc
catgtgaagatcagtaccacagcagacgatatccgacgtggacagtccatcacactgaac
tgtgccacaggaagcagtaacccctactccacagtgtcctggctgaaagatggagaaaag
ctgaagggcgtggatctggggaggaggaacacagagtttggaggggtgtctaccttcagt
aaggtgactcttgtggcctcatctgcagataacgaaagacgtgtgacatgccaggcgtac
agtgctgtgctgaatgaagctgtcaacaccttctacaaactcaatatcctctttccacct
gagttttcggagcagcagttgaaggtggtgcaggcagtggaatatggtgctgtgctgatc
cctctccttgtttctgccaaccccactgagatcacgtatacctggagcttccgaggggaa
atgctgattagagagggagctcccaagcatcacttgcgggatggaggtagcctggagatc
tggaatctgacccgctctgattcaggcaactacaggatccactgcatgaatgatgaggga
gagaatgagaccaccatcaaattggatattcagtattcaccatccatcaagagcattggt
gatccgacggaggtagacattggggggatagcggagataatatgcattgccgatgcaaat
ccagtcactccttccatgtttcagtggaaatggctgggtgatgacgaaagggaactggat
tcatatgaggaggtgacacatgatgcaactgggaagctgatcatcagagatgccaagaga
agtgatgcagggagatatgagtgctccgtggacaatggcattgcaccatctgtcaagaga
gatgccaaactcattgtgcgctttaagccagagattcagaaaggtgtccacttgagtaag
gtcgctgcatctggagatgggaccagtgctgcagttcttgtgtgcaaagcagaggggatc
cctaatgttcagttcagctggtccaagaaaggggtagccctagacccccaaagtcccagg
tactctatgaagatcctgcatgagagctcccttcacaccagcactctcaccattgtgaac
gtcagtgcagtgctggactatgcccttttcacttgcactgccaccaacccgctgggtgtg
gatagcttcgatatccatctcgtcagtaccagtcgccctgaccctccaacgcatttagaa
gttatcagttttacccataattctgtgaccctagcatggagtgcaggctttgatgggggc
ctggaacagaagtttcgggttcggtaccattggaaggaggctcccagtttcatgtatgtt
gatgtgtttccaccacaagctacaactttcaccatcacaggcttgaatccagacacacca
tacaacttctctgtcaatgccatcaatgtcctcggagacagtgactatgctgatggtggt
gctgtgctgacagtcacaacacaggagaaaataatgccagagatctgggtgactcctggt
gctcctactttaccccaaccagaagcatttgtgctgccgttgtacctcattgccatccta
tctgtagctgggggcatccttattctttccaatgcctctttcctggtgtggttcatcagg
aagcgctgcatccatcctgtggcaggtaatgccatgaagaagggagacagttctttgaat
gaatatggaaacggagaactaatcaatgtgggagcaaagcaaactttattgattgacagc
acttctgagaggagctccagtctgtatgagagctatgagcaggacagctcatcagatgct
gggctttattactatcccataagagattacaagccttctttgatggttcatcatgaaatg
acagagggggaaacagatgacacccagagcttccaaggcagggcattgaaatccacttgg
tcagactcactggaccctcatgaatacgatgaagtggctgattatgctgtctatgaagag
gttggcaacccttacccacaatccctcacttccacttatgctgccagcacccactggcca
gatgagaactttttgggagtctatcaccagaaaggaaagtcactggctggcttaagagaa
ccaatgagacactatggaaatgtggcagagttctcacccttgagccaggattatgaggtg
ccttttgagatgaggggccagctcgtataa
DBGET
integrated database retrieval system
