Geotrypetes seraphini (Gaboon caecilian): 117347289
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Entry
117347289 CDS
T09159
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03440
Homologous recombination
gsh03460
Fanconi anemia pathway
gsh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117347289 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
117347289 (BRCA1)
03460 Fanconi anemia pathway
117347289 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gsh01009
]
117347289 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gsh04121
]
117347289 (BRCA1)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117347289 (BRCA1)
03400 DNA repair and recombination proteins [BR:
gsh03400
]
117347289 (BRCA1)
Enzymes [BR:
gsh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117347289 (BRCA1)
Protein phosphatases and associated proteins [BR:
gsh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117347289 (BRCA1)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117347289 (BRCA1)
Multi subunit type E3
BRCC complex
117347289 (BRCA1)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117347289 (BRCA1)
DNA repair and recombination proteins [BR:
gsh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117347289 (BRCA1)
BRCA1-A complex
117347289 (BRCA1)
BRCA1-B complex
117347289 (BRCA1)
BRCA1-C complex
117347289 (BRCA1)
BRCA complex
117347289 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
117347289 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-Nse
BRCT_2
RING_XB3-XBAT31
BRCT_3
zf-RING_5
zf-RING_10
zf-ANAPC11
RTT107_BRCT_5
zf-RING_6
zf-MIZ
zf-rbx1
Prok-RING_4
Mago_nashi
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
117347289
NCBI-ProteinID:
XP_033773898
UniProt:
A0A6P8NSP4
LinkDB
All DBs
Position
13:58594379..58715357
Genome browser
AA seq
1903 aa
AA seq
DB search
MAFSTLEVEEVHNVLAVMQKNLECPICLELMKEPVSTKCDHLFCRFCLLKLLSKKRRGLA
ECPMCKNEVTRRSIKESPRFKLLIEGLLKTIQAFEMDTGFKFSSSQDCTKKCTESNANEQ
LNKDGGTVHSRGYRRRQKMVQEHGQGEKPSLEMNSNVQHSGNLSSRRSQRNKRQTQDAIE
PLCIDFGLDSSSEDLLEKAGSIGTCEAEESSKTEPESKECWADLKCDAKENGRPEADVLT
PAKSDFTKTNHEDPGRIPLHVGNIKTLPVTLAEENLRENNDSHASDSQVEQWGSSANPSS
LQNDAESFTCHAKGASPTQNILFENNKKWPKLDQRSKQELDTKIYHSMCDTHEGKVFKQQ
IDDLYDKELPCFETQLLPELSESNTCPISKKRVKRSLQRVNEWLSKNNEIFTSVNVTSEL
YPEGFSSWEDASDGESCISDKTELLANPMESSVVHNPDILLSKPATASVEDKVFGKTYKR
ERKSNPQFNMSFLSENRSTDNVAIDPGSTTKSIKRKRKNVCYLQPEDFIQKINQKEEEEI
CEEVNSCIIEKVPEAMENPKDAVDGCGVDEGKTADRMDFFPGQENAAWEVDTEQGKSSAK
IIERLSNTYEQDSNKVKTNTVPRKKVKLEREHLNRTMQALELVNEEEFGKGQHFLVDGSL
LQSLSNQSELQIDSYPSSEEARKAKVEQRIVRRSRRLQLLAEETSKETKRSCSSEKVPKV
LGNEGLLMLQGGCLTDLALVYTELKESKGMTNCTGNWSDPNPKEKELDSVGKNVQYGCEN
FPLVKKGQDHLKTDRISESLHFSPAFYSESEGTDVQKSISPLQLHTPTTEQPIQMRNDMD
ATEKSRLVESGNELLTGISCFPDKDLESSRSKEPPSIRNTLQEVNPETEDSELDTQYLLQ
TFKGAKRMSFILQSSSVPEPVTQNLTSDTSRQASGSPLRENREMNREISSSEDTQIETPE
FATFIKPTSEVNTVFETASTKHSDAIIPKNSTEAIMEHDLSSERNHVSITKNDLSSSENW
QICPPSMRRASIKTRNRRGLQKRRILNICSTLPKIGLEDSNWNCKDSENSGELDKKSKQF
LQTDDLSLSNDTKLNGETAEADQAEERSKLPVLKSQPEFTLLYATTGYLSPAAFDCRASK
SKNRQGENEQVLNGGCQEVATDGVQINPVTRTTSSQDSAAERFLEHSLALKNSGVLISPT
SSATPDSLLSSSNEIKKNTNYGEVNTRGKYVVDRKLVEERSLRKPQSSDSSGSQKLVKRY
KRQAQKLASSEEGSSEDEDLPCYQRIFNQSLSTPSHSASQRVLTNENSSKDQGEALFLTI
AEESQKKQLESPSREVHSVSPESVCSVNLFSSQSNGSEDFNNGAEEPKTMTSGHRCRSQC
TNKRINHVETEEVIIEQSEAIAAVEVDHGEDQQVERNLGAGSGYESEASNVIDSSGFSSQ
NEILTTQQRAVMQNNLKKMEQEMAALEAVLEQHATQVSETPGAVNDLLECQTRSELENET
MPDKEKASFSTWDTHQKEQCIPVDGGLATRDNSKNISQDVNNARSPTPLSTPSESQLQER
KVPEVAISLLKELKDSISQEDSSVPEKQQKGQETACQSTACSVVPGNTHRRDAEDKLNSR
TLHCSKSHPPAGDISSAARPSSCQPGDELTSPCIPRIASRNSAGESEQKMPTPPFHGQTG
VSSFKNPVMMTKRKLSLVASGLNQSELLLVQKFARKTQSVFSNQITGGTTHVIMKTDAGL
VCERTLKYFLGIAGRKWVVSYQWIVQCFKEGKILNESDFEVRGDVINGRQHGGPRRARQA
ADGMLFTDFEICCSGPFTDMSTEHLEWMVELGGASVVKQPHLFTEKPTLTKLIVVQPDAA
PEDTDYKAIQQQYGAVLVTREWVLDSMACYECQKFDMYLVFQS
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggccttttctacattggaagtggaagaggtacacaatgtactggctgttatgcagaag
aatttagagtgtcctatatgtctggagttgatgaaagagcctgtttcaactaagtgtgac
cacttattctgcaggttctgcctgttgaaactgctcagcaaaaagaggagaggtttagca
gagtgcccgatgtgcaagaatgaagttaccagaagaagtatcaaggaaagccccagattt
aagctattgattgaaggactcctgaaaaccatccaggcctttgaaatggacacgggattc
aaattttcatcaagtcaagattgtactaaaaagtgcaccgagtccaatgcaaatgagcag
ctgaacaaagatggcggcactgtgcacagtagaggctatagaaggcgacagaagatggtc
caggagcacggacagggagagaaaccaagcttggaaatgaattcaaacgtgcagcactcg
gggaacctgtccagcaggcgctcacagaggaacaaaagacagacgcaagatgccattgag
cccctctgtattgactttggattggattcctcctcagaagatttattggaaaaagcaggc
agtattgggacctgtgaagccgaagaatcgtccaaaactgaaccagaaagcaaagaatgt
tgggccgatttgaaatgtgatgcaaaggaaaacggcaggccggaggcggacgtgttgaca
ccagctaaatctgatttcaccaagacgaaccatgaagatccaggaaggattccactgcat
gttggaaatatcaaaactcttcccgtgacactagctgaggaaaatctgagggaaaacaat
gacagccatgcttcagactcgcaagtggagcagtggggaagctcagctaatcctagttca
ctacagaatgatgctgaaagcttcacctgccatgcaaaaggagcaagcccaacccaaaac
attctgtttgagaacaataaaaaatggccaaagttggatcagagatccaagcaagaactt
gataccaaaatataccatagcatgtgtgacacacacgagggaaaagtattcaaacagcag
attgatgatctttatgacaaagaattaccttgctttgaaactcaactgctacctgaactt
tctgaaagtaacacgtgtccaatctctaagaaacgagtgaaaagaagccttcagcgggtt
aatgagtggctttcaaaaaacaatgagatatttacatctgtaaatgttacttctgagctg
tatccagagggattttcctcttgggaagatgcatctgatggggagtcttgcatttcagac
aaaaccgaattactagccaatcctatggagtcttctgttgtacataatcctgacattttg
ttatcaaagccagccactgctagtgtggaagataaagtgtttgggaaaacttacaagcga
gagaggaaatcgaatcctcaatttaacatgagctttttgtcagaaaacagaagtacagac
aatgttgctattgatcctgggagcacaacaaaaagtataaaacgaaaaaggaaaaatgtc
tgttacctgcagcctgaagactttattcaaaagatcaaccaaaaagaagaggaggaaatc
tgtgaagaagttaattcgtgcattattgagaaagttcctgaggcaatggaaaaccctaaa
gatgctgttgatggctgtggggtggatgaagggaagacagctgatagaatggactttttt
ccaggacaagaaaatgctgcttgggaggtagacactgaacaaggtaaaagtagtgcaaaa
attatagaacgactgtcaaatacatatgaacaagacagtaacaaagtaaaaacaaacact
gtgccaaggaaaaaagtcaaattggagagagagcatctaaaccgcactatgcaagctctt
gagctagttaatgaagaggaatttggaaaagggcagcattttctggttgatggaagcttg
ctacagagtctttctaatcaatctgaactgcagattgatagctacccaagcagcgaagaa
gctaggaaagccaaagtcgaacagagaatagtcaggcgaagccgaagacttcagttactg
gctgaagagacatcgaaagaaacaaagagaagctgtagttcagaaaaagtgccgaaagtt
cttggaaatgaaggtttgctgatgctccaaggagggtgtcttacagaccttgccttggtc
tacacagaacttaaagagagcaaaggtatgacaaattgcactggaaattggtctgatccc
aacccaaaagaaaaagaactggatagtgttggcaaaaatgtacagtatggttgtgaaaac
tttcctttggtgaaaaaagggcaagaccatttgaagacagacagaatatctgagagcttg
cacttttctccagcattctattcagaatctgaaggcactgatgtacaaaaaagcatttcc
cctctacagcttcatactccaaccactgagcagcctatacagatgaggaatgacatggac
gcaactgaaaagtctagactagttgaaagtggtaatgaattattgacaggcatcagctgt
ttcccagataaagacctggaaagctccaggagcaaagagccaccttcaattaggaatact
ttgcaagaggtcaatccagagacagaggacagtgaattagacactcagtacctgttacaa
acattcaagggtgctaaaagaatgtcctttattttgcaatctagttctgtacctgaacct
gtgacacaaaatttgacctcagatacttcaaggcaagctagtggtagtcccttaagagag
aacagagaaatgaatagagaaataagtagcagtgaagatacacaaattgaaaccccagaa
tttgcaacgtttatcaagccaacttcagaagtgaatactgtctttgaaacagctagtact
aagcatagcgatgccattattcctaagaatagcactgaagccatcatggagcatgatttg
tccagtgaaagaaaccatgtcagcataacgaaaaatgaccttagcagttcagaaaattgg
cagatatgtcctccgtcaatgaggagagctagtatcaagacaagaaatagaagaggtctg
caaaaaaggagaatattgaatatatgtagcacgttgcccaaaattggacttgaagattcc
aattggaattgtaaagatagtgaaaactcgggtgaactggacaagaaaagcaagcagttt
cttcagacagatgatttaagcttaagtaatgacacgaagctcaatggagaaactgctgaa
gcagatcaggctgaagaaagaagcaagctgcctgtgttaaaatcacagcctgaattcaca
ttgctgtatgccacaactggttatctaagccctgctgccttcgactgcagagccagcaaa
agcaaaaataggcaaggggaaaatgagcaagtgctgaatggtggttgtcaagaagttgcc
actgatggagtccaaatcaatcccgttactcgtacaacttcgtctcaagattcagcagcg
gaaagatttctcgagcactcattggcacttaaaaatagcggtgtgctaatttccccaact
agttctgccacccctgatagtttgttgagttcttccaatgagatcaagaaaaacaccaac
tatggggaggttaacacacggggaaagtatgtagtggatagaaaattagtggaagagcgc
agtttaagaaaaccgcagagcagcgattcttcaggatcacaaaagttagtcaagaggtac
aagcgtcaggcccagaaactggcatcttcagaggaagggtcgagcgaggatgaagacctg
ccatgttatcaaagaatatttaaccagtctttgagtacaccatcccactcagcaagtcag
cgagttcttacaaatgagaattccagtaaagaccaaggagaggctctgtttttaacgatt
gcagaagaaagccagaagaaacagcttgaaagtccctcaagagaagtccattccgtcagc
ccagaatccgtgtgctctgttaacctgttctcgtcgcagtctaatggctcagaagatttt
aacaatggagcagaggaacctaagacaatgacttctggtcacaggtgtagaagtcagtgt
acaaacaaacggatcaatcacgttgaaactgaagaggtgataattgaacaaagtgaggcc
atagcagctgtggaagtggaccatggagaagaccagcaggtggaacggaatttaggtgcg
gggtctggatatgagagtgaagccagcaatgtgattgactcttcagggttttcttctcag
aatgagatactaaccacgcagcagcgggccgtcatgcagaacaatttgaaaaaaatggag
caggaaatggccgctttggaggcggtactggagcagcatgcaacacaggtttctgaaacc
ccgggtgctgtgaatgatttgctggagtgccagactagaagcgagctagagaatgagacc
atgccagataaagagaaggcatcattttcaacttgggatactcatcagaaagaacaatgc
attccagtcgatgggggcctggccacaagagataattctaagaacatcagccaggacgta
aataatgccaggtctccaacccccttgtccaccccatcggagtcccaactccaagagaga
aaagtgccagaggtggccatcagtctcctgaaggaactcaaagacagcatctcccaggaa
gacagttctgtccctgagaagcaacagaaggggcaggagacagcctgccaatctactgca
tgtagtgttgtaccaggaaatacacacagaagggacgctgaagataaactgaatagcaga
accctgcactgtagcaaaagtcatcctccggctggagatatttcttctgctgcaaggcca
tcatcttgtcagcctggggatgaattgactagtccttgcataccccgcattgctagcaga
aacagcgcaggggagagtgagcagaagatgccgacgccaccttttcatggtcaaacggga
gtgtcgagtttcaaaaacccagtgatgatgaccaaaaggaagttatctcttgtggcatcc
ggcctcaatcaaagtgaattgttattggtgcaaaagtttgccagaaaaacccagagtgtc
ttttctaatcagattactggaggaactacccatgttatcatgaaaacagatgctggacta
gtgtgtgagagaaccctgaagtacttcttaggtattgcaggaaggaagtgggtggttagc
tatcagtggattgtgcagtgctttaaagaagggaaaatactcaatgagtctgactttgaa
gtaagaggtgacgtaatcaatggacgacaacacgggggccctaggagggccagacaagcc
gcggacggaatgctgtttacagattttgagatctgctgttctggaccattcacagatatg
tcaacggagcatttggagtggatggtggagctgggtggtgcttcagtggtaaaacagcct
catctgtttacagaaaaaccgaccctcactaaactgatagttgtacagcctgatgccgct
ccagaagacacagattataaagccattcagcagcagtatggtgcagtcttggtcacacgg
gaatgggtactggacagcatggcttgctacgaatgccagaaatttgatatgtacctggtc
tttcagtcatga
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integrated database retrieval system
