Geotrypetes seraphini (Gaboon caecilian): 117351121
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Entry
117351121 CDS
T09159
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03018
RNA degradation
gsh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117351121 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
117351121 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsh03019
]
117351121 (LSM3)
03041 Spliceosome [BR:
gsh03041
]
117351121 (LSM3)
Messenger RNA biogenesis [BR:
gsh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117351121 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
117351121 (LSM3)
Spliceosome [BR:
gsh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117351121 (LSM3)
Complex C
U2 snRNP components
117351121 (LSM3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Motif
Other DBs
NCBI-GeneID:
117351121
NCBI-ProteinID:
XP_033781836
UniProt:
A0A6P8Q3Q7
LinkDB
All DBs
Position
17:complement(3332066..3339710)
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AA seq
102 aa
AA seq
DB search
MADEVEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggtggagcagcaacaaactacaaacacagtagaagagcctctggatctc
atcagactcagtctggatgaacgaatttatgtcaaaatgcgtaatgatcgagagcttcga
ggcaggctgcatgcatatgatcagcacttaaacatgattttgggagacgtggaagaaacg
gtgacaacaatagagatagatgaagaaacgtatgaagagatctataaatccaccaagcgg
aacatccctatgctgtttgtgcgaggtgatggtgtggtccttgtagcaccccctctgaga
gttggttga
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