Geotrypetes seraphini (Gaboon caecilian): 117351436
Help
Entry
117351436 CDS
T09159
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04622
RIG-I-like receptor signaling pathway
gsh04623
Cytosolic DNA-sensing pathway
gsh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117351436 (DDX58)
04623 Cytosolic DNA-sensing pathway
117351436 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117351436 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gsh04054
]
117351436 (DDX58)
Enzymes [BR:
gsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117351436 (DDX58)
Pattern recognition receptors [BR:
gsh04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
117351436 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
117351436
NCBI-ProteinID:
XP_033782613
UniProt:
A0A6P8Q5Z7
LinkDB
All DBs
Position
1:489821442..489938952
Genome browser
AA seq
958 aa
AA seq
DB search
MRPDEKQSLKLFRSYLESTLCPTYILSYMKSWLTEQDTEELEAVEEKKGPTTATSVFLER
LLQLEVDGVFRGFLDGLRNAGYTGLCEALENQDFQKIESLDKYRILLRNLEPSIKNNIKP
TEMIPHLNCCLLPRQCEEIMQIAENRGPIAGSEKLIACLLRSDKEAWPKTFQLALETENS
ICMDLWDIREDNEKSAGKISEDEQDENSVTSIAFHYEEKLENANLCSSLGRTVLTNDTGT
FTPETAEGSLDLDHVNILRKYQRELAKPALEGKNVIICSPTGSGKTIVALAICEHHFTTM
PRDKRGKVVFLATKVPVYEQQKEVFRKHFEKEVFRKHFERKRYTVVGISGETSESVPVGE
VICNNDIIVLTPQILVNNLKDGSVSCLSIFSMMIFDECHNTTKNHPYSVLMSNYLDLKLS
SAPPKLPQIIGLTASIGVGKSRNLGETKEYICRLCATLDAHVISTVRENAEDLENYVSRP
KKSIRQIGKRQTDPFADIISNMMAETEELAKNVYAPLENLSDIKNRSFGTQKYEQWIVDT
QKKCRVLKMENKEEESLLCRTLFTYTEHLRKYNDALMINDDARTKDALAYLQEFFTNVRS
GGFDVLEQALTKKFEDKQQELTRISEDEANENPKLDDLTFVLDEQYRMNPQTRTLLFVKT
RALTTALKNWIEESPQLSFLKPDVLIGRGKRDQSTGMTLPSQKGVLDSFKTNGESKVLIA
TSVADEGIDIAQCNLVLLYEYVGNVIKMIQVRGRGRAKDSKCILVTSKTDQAEKEKINHH
QEDMMNKAVNELQRLSEEQFLKQVNILQTEEKKIRDLKKCTIQPKPTGGNKRLLCSKCKT
FACNTNDIRVIQAAHHAVLDESFATRFITKPHPKPKCFQGFHKRAKILCKEQKCRHDWGI
TGSYLTLQDISLIKIESFVVEDIETGAQYYFPKWVDVNFTMKDFDIEEMSKQAQANSQ
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgaggccggacgaaaagcagagcctgaagctcttcaggtcttatctggagagcaccctg
tgtcccacttatatcctcagctacatgaagagctggcttactgagcaagatactgaagaa
cttgaagctgtagaagaaaaaaaggggcccaccactgctacttcagtgtttcttgaacga
ctgcttcagttagaagtggatggagtgtttcgtggatttttagatggcctgagaaatgca
ggatacactggcctttgtgaggcattggaaaaccaagatttccaaaagattgaaagcctc
gataaatataggatacttctgagaaatctagagccatctatcaaaaacaacataaaacca
acagaaatgattcctcatctaaactgttgccttctacccagacagtgtgaggaaattatg
cagattgcagagaacagaggcccgattgcaggttcagaaaaactaattgcttgccttctc
agatcggacaaggaagcttggcctaaaacctttcagctggctttagaaactgaaaactct
atatgtatggatctgtgggacatacgagaagataatgaaaagtcagctggtaaaataagt
gaggatgaacaggatgagaacagtgttaccagcattgcattccattatgaagagaagttg
gaaaatgcaaatctgtgttcttccttaggtagaacagtgcttacaaatgacactggaacc
tttacaccagaaacagcagaagggtcactagacttggatcatgttaacatactacgaaaa
tatcagagagaacttgccaaacctgccttagaagggaaaaatgtaataatatgttcacca
acaggctctggaaaaaccattgtggcacttgctatatgtgaacatcattttacaactatg
cctagagacaaaagaggaaaagtggtctttctggccactaaagtaccagtctatgagcag
caaaaagaagtcttcagaaaacactttgaaaaagaagtcttcagaaaacactttgaaaga
aaaaggtacactgtagtaggcatttctggagaaacaagcgaatcagttccagtgggagaa
gtcatttgtaacaatgacatcattgtgctgacaccacagatccttgtgaacaatcttaaa
gatgggtcagtttcatgtctgtctatattttccatgatgatatttgacgagtgccacaac
acaactaaaaatcacccttacagtgttctaatgtccaattatttggatttgaaacttagc
tcggctccacccaaactgcctcagataattggactgacagcttcaattggcgtgggtaaa
tccaggaatcttggagaaacgaaggaatacatttgcaggctgtgtgctaccctagatgca
catgttatatcaacagtcagagagaatgcagaagatttggagaactatgtatccaggcca
aagaaatcaatcagacaaattggaaaacgccagacagacccctttgctgacatcatttca
aacatgatggctgagactgaggaactggcgaaaaatgtttacgcaccattagaaaatctg
tctgacattaagaatcgaagttttggaactcagaaatatgaacagtggattgttgatact
cagaagaaatgcagagtgttgaaaatggagaacaaagaggaagagagcttgctgtgcagg
acactctttacatacactgagcacttgagaaaatacaatgatgctctcatgatcaatgat
gatgcacgcacaaaggatgcattggcatacctacaagaatttttcaccaatgtcagaagt
ggaggctttgatgtgctagaacaggcgttaacaaagaaatttgaagataaacaacaggag
ctgactaggatatcagaagatgaagcaaatgaaaatcccaaactggatgacctcaccttt
gttctggatgaacaatatcgtatgaacccacagacaagaacacttctcttcgtaaagact
agagctttaacgaccgctttgaaaaactggattgaagaaagtcctcaactcagcttcctg
aaaccagatgttctaataggccgtggaaaaagagatcaaagcacaggaatgactttacca
agtcaaaaaggtgtgctggattcattcaaaaccaacggagaaagcaaggtgctgatagct
acgtcagttgctgatgaaggaattgatattgcacagtgtaaccttgtccttctgtatgaa
tatgttggtaatgtcataaagatgattcaggttagaggtcgtggaagagccaaagacagc
aaatgtatcctggtgactagtaaaacagaccaagctgagaaagaaaagattaaccatcat
caggaagatatgatgaataaagctgttaatgagttacaacgtttaagtgaggaacaattt
ttgaaacaggtcaatattttacaaactgaagagaagaaaattcgtgacttaaaaaaatgt
acaattcaaccaaaaccaacaggtggcaataaaaggttgctgtgttcaaaatgcaaaaca
tttgcatgcaacactaatgatatcagagttattcaggcagctcatcatgctgtgcttgat
gaatcatttgccacacgtttcataacaaagccacacccaaaaccgaaatgttttcaaggt
ttccataagagagccaaaatattatgcaaggagcaaaaatgccgccatgattggggaata
actgggagctatctgacattgcaggacatttctctaattaaaattgaaagttttgtagtt
gaggatattgaaacaggtgcccagtattacttcccaaagtgggtggatgttaattttacc
atgaaggattttgatattgaagagatgagtaagcaggcacaggctaactctcagtga
DBGET
integrated database retrieval system
