Geotrypetes seraphini (Gaboon caecilian): 117351816
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Entry
117351816 CDS
T09159
Symbol
PCDHGC3
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin gamma-C3
KO
K16497
protocadherin gamma subfamily C
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gsh04515
]
117351816 (PCDHGC3)
Cell adhesion molecules [BR:
gsh04515
]
Cadherins
Protocadherins
117351816 (PCDHGC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
ADH_zinc_N
ADH_zinc_N_2
ECSCR
TMEM154
Motif
Other DBs
NCBI-GeneID:
117351816
NCBI-ProteinID:
XP_033783550
UniProt:
A0A6P8PP36
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All DBs
Position
18:39726619..39735480
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AA seq
981 aa
AA seq
DB search
MSEERAKGTFVGNFVADLGLDLKRLSDRRLRVVSGASKNYFEADLENGRLSVNERVDREE
LCGLVAPCLINFEIVMENPLELYRATVEIQDINDNAPVFLTSQMKLGISESMAPGTRFPL
ESAQDADVGVNSLQTYRISANEHFALSVQTRGDGSKYAELVLEKGLDREERTELRLVLTA
LDGGNPPKSATVPIIIDILDADDNEPVFNQSTYTARVWENAPTDTIVVKVEAFDLDEGLN
GDIIYSFSSHTPAKMRELFFLDSANGELRVKGLLDFEESKMYEIYIQAKDRGSNPGHGHC
KVLVEIIDVNDNAPEITVTSVYSPVPEDALPGTVIALLSVMDVDSGNNGLVNCLIPPNIP
FSLSSSIKNYYTLKTKEALDRELVSVYNISIIATDTGLPSLFTEKKLTVEVSDVNDNVPK
SLQSSYNVYVMENGVPGMPIFNISASDPDSGKNGELSYSIVESGTLGDLVLRYFSINHQS
GTISVLVPLDYEDIREYAMTVQVFDGGSPALSSNITIKVFVTDQNDNAPSILYPRPNARP
AQADMIPRTTKARYLVTKIVAWDADAGHNAWISYLFLEATDSSLFTVGLHSGEIRTARDI
VESDSVRHILVILIKDNGEPMLSSTTTLTISVTDTPAEMLTDVADISPTSEQKATLTFYL
IISVILVSVAFFITVVVVGFVKLYKWRQSKDPYKTSRSSPYRTPPSLTYVDAIRSEFSPQ
NYCHQVYLTTDSRKSDFLYKKTDLSMPVGSCYNTLGNCAPGLYHQISNINNRLHDPIEVC
LIGCEFSTGYGSAVNIAKVHPGSTYVVFGFGGFGLSVIICCKVAGASRIFGVDVNPDKFA
KAKEVEVTNCINPWDYDKPIHEVLTGMTNGGLDYSFECIGNVNMVSALKAANPTFGTFVI
IGIAPXNLVFDPMLMLTGCTLKGALSGNLKSKDCFSKLISNYQAKKFSLEPXVTHAVSFD
KINEAFELMRSGKSIRTVLTF
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggagcgagcaaaaggcactttcgttggtaattttgtggctgacctgggcttg
gaccttaaaaggctctcagatcgcaggctccgagtcgtctctggagcaagtaagaactac
tttgaggcagatctggaaaatgggaggctgtctgtgaacgagcgtgtagacagggaggaa
ctctgcggtttggtcgctccctgcctgatcaatttcgagatcgtcatggagaatccactc
gagttataccgcgctaccgtggaaatacaggacatcaacgacaacgcgccagtttttctc
accagccaaatgaaattagggatcagtgaatccatggcgcccggaactcgcttcccgcta
gagagcgcgcaagatgctgatgttggagttaactctttgcagacttatcggatcagtgcc
aatgaacattttgcattaagtgtacagacgcgcggagacggtagtaaatatgctgaacta
gtgctggaaaagggactggacagggaagagcgcacagagctgaggttagtcttaacggca
cttgacgggggaaacccacccaagtcagcaactgtacctataattattgatattctggat
gccgatgacaatgagccagttttcaaccaatccacctacactgctcgtgtatgggaaaac
gcaccaacagacacaatagttgtcaaagtagaagcttttgatctggatgaaggtctcaat
ggagatatcatttattccttcagtagtcacacccctgctaaaatgcgagaactatttttt
ttggattctgctaatggagagctgagagtcaaaggattactagattttgaagaaagtaaa
atgtatgagatttacatacaagctaaagacaggggttctaatccaggacatggccattgc
aaagtattggtggaaattattgatgtcaatgataatgccccagagatcacagtgacctca
gtgtatagccccgtacccgaggacgctcttccaggtacagtgatagccctattaagtgta
atggatgtagattctggaaataatggtctggtgaactgtttaattccacctaatatcccc
tttagtctcagttcctctattaaaaattattataccttgaaaaccaaagaagctctggac
agagaactagtctctgtctacaatattagcattatagcaacagataccgggttaccttct
ctcttcaccgagaaaaaactaacagtggaagtctcagatgtcaacgacaatgtgcccaaa
tctctacagtcctcttataatgtttatgtgatggaaaatggcgttccaggaatgcccata
ttcaatataagtgcttcagatcctgattctgggaaaaatggtgaactctcttattccatt
gttgaaagtggtaccttaggagatttagttctcagatatttctccatcaatcatcagagt
ggcaccatatctgttcttgttcccctggactatgaagatatcagggaatatgcaatgact
gtgcaagtttttgatggaggaagtccagccctttccagtaacatcaccataaaagtgttt
gtaacagaccagaatgataacgctccttcaatcttgtacccacgccccaatgccagacct
gcacaagcagacatgatccctcggacaacaaaagctagatacctggtcaccaagatcgta
gcttgggacgcagatgcaggacataatgcctggatctcatatttatttcttgaggccaca
gattctagcctgttcaccgtgggcctccacagtggtgaaataaggacagctcgggatata
gttgaaagtgattccgtcaggcatattttagttatcttaataaaagataatggagagcca
atgctgtcatctactaccactcttacaatatctgttacagacacacctgctgaaatgcta
actgatgttgcagacatctctcccacatctgagcaaaaggcaactttaacattttattta
attatttcagtgatattagtttctgtggccttttttatcacagtagtagtagtaggcttt
gttaaattgtataaatggcggcaatctaaagacccatataagacgtccaggagctctcct
tacagaacacctccatctttgacctatgtggatgcaattcgcagtgaattttctcctcag
aactattgccatcaggtgtatttaactacagactcacgcaaaagtgactttttgtataaa
aagacagatttatcaatgccagtcgggagttgctacaatacactgggaaactgtgctcct
ggattatatcatcagatatccaatataaacaacagactacatgatcccattgaggtctgc
ctgattggctgtgagttttccactggttacggctctgcagtcaatattgccaaggttcat
cccggttctacatatgttgtatttggttttggaggatttggcctttctgttatcatttgt
tgcaaagtagctggtgcctctcgtatctttggagttgacgttaacccagacaagtttgca
aaggcaaaagaagtagaagtcactaattgcattaacccttgggattatgacaagcccatt
catgaagtgctgactggaatgactaatggtggtctggattactcctttgagtgcattgga
aatgtaaatatggtatctgccctgaaagctgccaatcctacatttggaacttttgtgatc
attggaatagctcctnntaatttagtctttgaccccatgctgatgctgacaggatgcacc
ttgaaaggagctctttctggaaacttgaaaagcaaagactgtttctctaaacttatttcc
aattaccaagcaaagaaatttagcctggaaccanctgtgacccatgctgtatcttttgac
aaaataaatgaggcatttgaactgatgcgcagtgggaagagtattcgcactgtcctgaca
ttttaa
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