Geotrypetes seraphini (Gaboon caecilian): 117362174
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Entry
117362174 CDS
T09159
Symbol
RB1
Name
(RefSeq) retinoblastoma-associated protein isoform X1
KO
K06618
retinoblastoma-associated protein
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04110
Cell cycle
gsh04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117362174 (RB1)
04218 Cellular senescence
117362174 (RB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gsh01009
]
117362174 (RB1)
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117362174 (RB1)
Protein phosphatases and associated proteins [BR:
gsh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117362174 (RB1)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
117362174 (RB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rb_C
RB_A
RB_B
DUF3452
TFIIB
Motif
Other DBs
NCBI-GeneID:
117362174
NCBI-ProteinID:
XP_033804008
UniProt:
A0A6P8RH78
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All DBs
Position
6:complement(62815240..63197648)
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AA seq
938 aa
AA seq
DB search
MTTRRESYGAGVMPLRSQGRPGNSGPEDSACTDMSVCELESAGALERLEFEDAEFISLCE
KLRASNNVRECAWKTWEKVSSMDGILEGCIKKKKELLGICVFISAVDLDEMTFTFTELQK
NINISVNTFFQLVQEIDVNMDTISTKVDNTVLRLKKKYDVLCALYDKFQRTFDHIFMAES
NAETFVDVNPTLIMKVSWITFLLAKGKVLQMEDDLVISFQLLLCVFEYFIKLSPSAVLKE
PYKTAVSNMSINGPGRTAKRSQNRNTLTSKQIETNTRVIEALCKENDCSVDEVKDIYVKS
FAPFLDSVGVSALNGLPEVENLSKQYEELYLKSRGLDARLFLSHDETLQQRDCFELERTP
QKTDSEEVNVIPPQTPVRAAMNTIQQLMVILNSANDSPSNSLISYFNNCTVNPVENILQR
IEHLSYVFRTRFAEAVGQACVEIGVQRYKLGVRLYYRVMESMLKSEEKRLSVHNFSKLLN
NSAFHTSLLACAVEVVMATYGRSAFECGGSSSETDLTFPWILYVFDLKAFDFYKVIESFI
KVESSLSKAMIKHLERCEHQIMECLAWKSDSPFFDLLKQSKDREGQIEQPEPTSTLYLPL
QHNHTAADLYLSPIRSPRKKGCTGSVRVNSTQNTDGQTSATTQPRHPQRAQRSTSLSLFY
KKVYRLAYLRLKALCSQLLSDHPELEYVIWTLFQHTLQNECELMKDRHLDQIMMCSMYGI
CKVKNIDLKFKTIVHAYKDLQHTNQETFKHVLIREGKHDSIIVFYNLVFMQKLKTNILQY
ASTRPPPLSPIPHIPQSPYKFASSPLRVPGGNNIYISPLKNPYKCSEGPLSPTKMTPRSR
ILVSIGESFGTSEKFQKINQMVSSGDHLLKRGTEVGNHPKPLKRLRFDIEGQDEADESKH
MLGESKFQQKLAEIPSTRTRMQKQKLADGMDTSSKEEQ
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccgcagggagagttatggtgcaggtgtcatgcccctcaggagccagggcaga
cctggaaactctggtccggaagactctgcgtgtactgacatgtctgtctgtgagctagaa
tctgcaggcgccctggagaggcttgagtttgaagatgccgagtttatttcattgtgtgag
aaactaagagcatcaaataatgtaagagaatgtgcatggaaaacctgggaaaaagtctcg
tccatggatggaatacttgagggttgtatcaaaaagaaaaaagaacttctaggaatctgt
gtcttcatttcagcagtagatttggatgagatgactttcacattcactgaactgcagaaa
aatatcaatattagtgtaaatacattcttccagttggtacaggagatagatgtcaacatg
gacactataagcacaaaagttgataatactgttttaagactgaagaagaaatacgatgta
ttgtgcgcactttatgacaaatttcaaaggacttttgatcatatattcatggcagaatcc
aatgcagagactttcgtggatgtaaatcctacattgattatgaaggtttcttggatcacc
tttctgcttgcaaaaggaaaagtgttacagatggaggatgacctggtgatctcattccag
ctgttgctttgtgtctttgagtattttatcaaactgtcaccctctgctgtgctcaaggaa
ccatataaaacagctgtgagcaacatgtcaataaatggcccaggccgtactgcaaagcga
agccaaaacaggaatacccttacatcaaagcaaatagaaaccaacaccagagtcattgaa
gccctctgtaaagagaacgattgcagtgtggatgaggtgaaagacatatatgtcaaaagt
tttgcccctttcttggattctgttggtgtttcggctctaaatggacttccagaggtggaa
aatctctcaaaacaatatgaagaactttaccttaaaagcagaggtttggatgctaggttg
tttctgagccacgatgaaacactgcagcagagagactgttttgaactggaaaggacacct
caaaaaactgacagtgaagaagtcaacgtgattcctccacagactccggtgagggctgct
atgaataccatccagcagcttatggtaatcttaaattctgcaaatgactcaccatcaaac
agtctcatctcgtattttaataactgcacagtgaatcctgttgaaaatattttgcaaaga
attgaacatctgagttatgtcttcagaactagatttgctgaagcagtcggacaagcatgt
gttgagattggtgttcagagatataaacttggagtacggttgtactacagagtcatggag
tctatgttaaagtcggaagaaaaacggctgtctgttcataattttagcaaactgctaaac
aatagtgccttccatacatctctgttggcctgtgcagtcgaagttgtcatggcaacatat
ggcagaagtgcttttgagtgtggtggcagcagttcagaaacagatttgacgtttccatgg
atactctatgtatttgacttgaaagcctttgacttctacaaggtgatagaaagctttatt
aaagtagaaagcagcctatcaaaagcaatgataaagcatctggaacgttgtgagcatcaa
atcatggaatgccttgcatggaagtctgattcaccattctttgatctcctgaaacaatca
aaggatcgtgagggacagattgaacagcctgagccaaccagcacgctttacttgcctctt
cagcacaaccatactgcagcagatctatatctttcccctataagatctcccaggaaaaaa
ggatgcacaggatcagtgcgtgtaaattctacacaaaatacagatggacagaccagtgct
acgacccaacctcggcatcctcaaagagcacagagatcgacctctctctctcttttctac
aagaaagtatatcgactggcatacctgcggttgaaggctctttgctcacaactcttatct
gaccaccctgagctagaatatgtgatttggacccttttccagcacaccctgcaaaatgaa
tgtgaacttatgaaagaccggcatttagaccagattatgatgtgttccatgtatggtatc
tgcaaagtgaagaatatagacctaaagtttaaaactattgttcatgcgtacaaggacctg
cagcacacaaaccaagagacattcaagcatgttctgattagagaaggaaagcatgactcc
attatcgtgttctataacttggtctttatgcagaaactgaaaaccaacattttgcaatat
gcatctaccagacctcctcctttgtccccaattccacacattcctcaaagcccttataag
tttgcaagttctcccttgcgtgttcctggtggaaataacatctacatctcgccattaaag
aatccatacaaatgctctgaaggaccactctcgcccacaaaaatgacaccaagatcaaga
atccttgtgtctattggtgaatcattcgggacttcagaaaagttccagaagataaatcag
atggtaagcagtggagatcacctgctgaagcgaggtactgaagtcggcaatcatcccaaa
ccactgaaaagacttcgctttgacattgaaggacaagatgaggcagatgaaagtaaacac
atgcttggagagtctaaattccaacaaaagctggctgaaatcccatctactagaaccaga
atgcagaaacaaaagctggcagatgggatggatacctcaagcaaagaagaacagtga
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