Geotrypetes seraphini (Gaboon caecilian): 117363523
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Entry
117363523 CDS
T09159
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04115
p53 signaling pathway
gsh04210
Apoptosis
gsh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117363523 (APAF1)
04115 p53 signaling pathway
117363523 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117363523 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
APAF1_C
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
EIF3I
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
WHD_APAF1
NB-ARC
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR41
CARD
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
eIF2A
Beta-prop_NWD2_C
WD40_like
RMC1_N
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_IFT140_1st
CARD_2
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_ACSF4
Beta-prop_Nup120_160
Nucleoporin_N
AAA_16
Beta-prop_SPT8
Beta-prop_WDR11_2nd
AAA_22
NPHP3_N
Beta-prop_DCAF12
nSTAND6
NACHT
Viral_helicase1
AAA_18
DUF3173
Motif
Other DBs
NCBI-GeneID:
117363523
NCBI-ProteinID:
XP_033807286
UniProt:
A0A6P8RPH7
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Position
7:2414388..2548765
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AA seq
1250 aa
AA seq
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MDENARSYLLRHRSALERDIKTSYIMDHMINDEVLTLQEENRVKFETSQTKRAAVLLQIL
LEKDNYAYISFYNALVHEGYKDLAALLQDGIPVLSSCENKIVDGITSYVQTVLCEGGVPQ
RPVVCVARPELVKAVQQKLYCLRNESGWVTIHGMAGCGKSVLAAEVLRDHRLLEDCFPRG
VHWVSVGKQDKAGLLLKLQNLCIRLDQDLQFSQRPPLNTEEAKDRLRLLITRKYPRSLLV
LDDIWDSWVLKAFDIQCRILLTSRDKSVADAVSGNKHLVSVESGLPLDKGLEVLSLFVNM
KIKDLPSEADTIVKECKGSPLVVSLIGALLRDFPNRWEYYVRQLQNKQFKRIRKSSSYEF
EALDEAMSISVEMLNEYLRNYYKDLSILVKDVKVPTKVLCTLWDMETEEVEDILQEFVNK
SLLFCDRNGKTFLYYLHDLQLDFLTEKNREQLPDLHAKMVKQYQRYYERHLPKLDQEDCM
YWYNFLAYHMASAKMHKELCSLLFSLDWLKAKTELLGPAHLIHECIEYRHILDEQASAVR
ENFQEFLSLNGHLLGRSPLPDILQLGLSQPNSSEIYKQAKSQAIQKLSSGAFYIEWVNKM
NIQSLSRLVVRPHTDAVYHACFSSDGQNIASCGGDKTLQIFKTETGEKLLEIKAHDDEVL
FCAFSADNKYIATCSADKKVKVWNSRLGKLFRIYDEHTEQVNCCQFTSIDSQPLLATCSN
DCFLKFWDLNMKHCRNTMIGHLNAVIHCRFSPDDKYLASCSADGTLKFWDVSGNELKSID
VRECFRNQDEQQEDLDVLVKCCCWSHDCARIMAAAKNALFIFDVETTDLLIELRTSYLST
IQYCDYAPSSQSIALALSHYSVELWNIETSLKIADCAGHLSWVHCVAFSPDGSSFLTSSD
DQTIRVWETSKVCKSSGMLLKREMDVVFSENDVLVLVPDRTKCLLLIDGKSGSILSRTEA
QESSITCCCLSKDFKLAAFGDEAGIVKVLELPSGRVLRSMMGHKKSVQHCQFTPDGQTLI
SSSDDATIEVWEWQSENCILLQGHKEAVKNFELLENSRLLSWSFDGTVKVWNIITGELES
DFDCHNGAVLSCAVSNDTFKFSSTSANKSAKIWCFAKSTSLHHLNGHQGCVRCCTFSFDD
QYLATGDDNGEIRIWNVSDGELLHLYSQVVESDGDIAHGGWVTDVHFSPDSKMLISTGGY
VKWWKVDTGESLQTFYTHGTNLKSIYVSPTFRVYVTIDNLGILYVLEMLV
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaatgctcgaagttatctgcttcgccaccgttcagctttggagagagacatc
aaaacctcttacattatggatcacatgataaacgatgaagtactaacattacaggaagaa
aacagagttaaatttgagacttctcagactaaaagagcagctgttcttcttcaaatactt
cttgaaaaggacaattatgcttacatatccttttataatgcactggttcacgaaggatat
aaagatcttgcagctcttcttcaggacggtattcctgttctctcttcctgtgaaaacaaa
attgtggatggaattacctcatacgttcaaacagtactttgtgaaggtggcgttccccag
agacctgttgtatgcgtggcccgaccagaactggtcaaagctgttcaacagaagctgtac
tgcttacggaacgaatcggggtgggtcacgattcatgggatggcaggctgtgggaagtct
gtattagcagcagaagtgctcagagaccaccgtcttttagaagattgttttccgagagga
gtgcattgggtgtctgttggaaagcaggacaaagcaggacttctgttgaagcttcagaat
ctttgtattaggttagaccaagatttacagttttcacagaggccaccacttaacacagaa
gaagcaaaagaccgtctacgtctgttgataacacgtaaatatccaagatctctcttggtc
ttggatgacatttgggattcctgggtattaaaagcatttgatattcaatgccgcattctc
cttacaagtagagataaaagtgtagctgatgctgtttctggcaataaacatttggtttca
gttgagagtggacttccacttgataaaggattggaagttttgtccctttttgttaacatg
aaaataaaggatcttccttcagaagctgacacaattgtaaaagaatgtaaaggctctcct
cttgtggtgtcattgatcggtgcattgttacgagattttccaaatcgttgggaatactat
gttagacagcttcaaaataaacaatttaaaagaataaggaagtcatcatcttatgaattt
gaagcacttgatgaagccatgtctataagcgttgaaatgctgaatgagtacttaaggaac
tactacaaagatctctctatccttgtaaaggatgtgaaagtgcctactaaggttctgtgc
accctttgggacatggagactgaagaggttgaagatattcttcaagagtttgtcaacaaa
tctctattattttgtgatcgaaatggaaaaaccttcctgtattatttacacgatcttcaa
ctggatttcctcacagaaaagaatcgtgagcaactcccagatctgcatgcaaagatggtc
aaacaataccaaagatattatgaaaggcatctacctaagttagaccaagaggactgcatg
tattggtacaactttctagcctaccatatggctagtgccaaaatgcacaaagagctctgt
tcgctcttgttttcgttggactggcttaaagcaaaaacagaacttctaggaccagctcat
ctcattcatgagtgtatagaatacagacatatattagatgaacaggccagtgcagtacgt
gaaaacttccaagaatttttgtcattaaatggacacctccttggacgcagtccacttcct
gatattctacagttgggtctttctcagccaaattcttcagaaatctataaacaagctaaa
tcacaggccatacagaaactcagcagtggagctttctatatagaatgggttaacaaaatg
aacatacagagcctatcccgtctggtggtccgtccacatacagatgccgtttatcatgcc
tgcttttcttcggatggtcaaaatatagcatcttgtggtggtgataagacattgcagata
tttaaaactgaaacgggagagaaacttctggagataaaggctcatgatgatgaagtacta
ttctgtgcattctctgcagacaataagtatatagcaacctgctcagcagataaaaaagta
aaggtatggaattcaagattaggcaagctgttcagaatatacgatgagcacacagagcaa
gtcaactgctgtcagtttaccagcatcgactcccaaccccttctggcaacttgttcaaat
gactgtttccttaaattttgggacttgaatatgaagcactgtcgaaacacaatgattggc
cacttgaatgctgtcatccactgccgattttccccagatgacaaatatttggctagttgc
tctgcggacggaactctgaagttctgggatgtatcaggaaatgaactgaaatcaatagat
gtgcgagagtgcttcagaaatcaggatgaacaacaggaggatctggatgtgttggtgaag
tgctgttgctggtcacatgattgtgctagaataatggcagcagcaaaaaatgcacttttt
atttttgatgtcgaaactactgacctattaatagaactacgaacaagctaccttagcaca
atccagtattgtgactatgcacctagcagccaatcgatagcgctagctttatcccactac
tcagtggagctgtggaacatagaaacgagtctgaaaatagctgattgtgctggacatttg
agctgggttcactgcgttgccttttctcctgatggatcttcctttctaacatcttctgat
gatcagactataagggtctgggaaacaagtaaggtgtgcaaatcttctggtatgctctta
aagcgtgaaatggatgttgtgtttagtgagaatgatgttctagttttggtacctgacaga
acaaagtgtttgttgttaattgatggaaagtcaggcagcatcctgtctcggacggaagcc
caagaatcttccattacttgctgttgtcttagtaaagattttaaattagcagcatttgga
gatgaagctggaattgtgaaggttctggaattgcctagtggtagagttctccgatcaatg
atgggacataagaaatctgtccagcattgccagtttacacccgatggtcaaaccttgatt
tcaagttctgatgatgcaaccattgaggtctgggagtggcagtcagaaaactgcatattg
ctacaaggtcacaaggaagcagtgaagaattttgaactgttagaaaactcaagattactt
tcatggtcctttgatggaacagttaaggtttggaacataattactggagaattagaaagt
gattttgattgccataatggtgcagtactttcttgtgctgtttctaatgataccttcaag
ttttcttctacttctgccaacaagagtgccaagatatggtgttttgcaaaatcaacttct
cttcatcacctgaatggtcatcaaggttgtgtacgatgctgcactttctcattcgatgac
cagtacttagcaactggggatgacaatggagaaataaggatttggaatgtgtcagacggt
gaattgctccatctgtactcccaagtggttgaaagtgatggcgatatagcacatggcggc
tgggtaacagatgtccatttttcccctgacagtaagatgcttatttcaactggaggatat
gttaagtggtggaaagtagatactggagaatccttacagacattctacacacatggaacg
aatctgaagtcaatatatgtgtctcctacctttagagtctatgtgactattgataacctt
ggaattctctatgtgttagaaatgttagtgtga
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