Geotrypetes seraphini (Gaboon caecilian): 117363527
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Entry
117363527 CDS
T09159
Symbol
THBS1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh04115
p53 signaling pathway
gsh04145
Phagosome
gsh04148
Efferocytosis
gsh04350
TGF-beta signaling pathway
gsh04510
Focal adhesion
gsh04512
ECM-receptor interaction
gsh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117363527 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117363527 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117363527 (THBS1)
04148 Efferocytosis
117363527 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
117363527 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117363527 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117363527 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gsh04131
]
117363527 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gsh00536
]
117363527 (THBS1)
Membrane trafficking [BR:
gsh04131
]
Endocytosis
Phagocytosis
Opsonins
117363527 (THBS1)
Glycosaminoglycan binding proteins [BR:
gsh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117363527 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
cEGF
EGF
TSP1_ADAMTS
Laminin_G_3
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
117363527
NCBI-ProteinID:
XP_033807305
UniProt:
A0A6P8RPC6
LinkDB
All DBs
Position
7:69890810..69996028
Genome browser
AA seq
1176 aa
AA seq
DB search
MDLFAAVFALLLLTACASSHIQDTVSDDNSVFDLFELAGFSRKGPGRKLGGVYLVKGPDP
SSPAFRIENADLIPALPDEKFQDLIDAIHRERGFILMASLRQAKKTRGTLLAVERRDDSR
HIFNLVSNGRAGTLDITLSGEGKQQVVSVEDTLLATGHWKNITLFVEEDRAQLYVGCEKM
ENAELDIPIQNIFSRDLANIARLRIAKGGVQDNFQGVVQNLRFVFGTSLETILRNKGCSS
TTKNAIITLDNPINGSSPAIRTSYTGHKTKNMEAMCGFSCDEMTSMFLEMRRLQTIVVSV
QETVQKMTEKNELLTGRVCVHNGIQHEHREEWRVDSCTECTCQNSATICRKISCPLITCS
NSTIPDGECCPRCWPSDSAEDDWSPWSEWTPCSVTCGNGIQQRGRSCDSLNNRCEGSSMQ
TRSCHLQECDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCNSPRPQMNGKDCRGEAR
ENKPCQKDPCPIDGQWGPWSPWDSCTLTCAGGIQKRGRLCNNPEPKYGGKDCLGDILDTQ
ICNKQDCPIDGCLSNPCFAGTKCTSFPDGSWKCGACPLGYQGNGLQCHDIDECKEVPDTC
FVHNSVHRCENTEPGYNCLPCPPRFTGTQPFGKGIEEATAKKQVCKPQNPCTDGTHTCNK
NARCIYLGVYADPMFRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCP
NLPNSGQEDYDKDGTGDACDSDDDNDGITDDRDNCAFIYNPQQYDYDRDEVGDRCDNCPY
NHNPDQTDTDNNGEGDACAVDIDGDGVLNEKDNCAYVHNVDQRDTDMDGVGDHCDNCPME
HNPEQTDSDSDLIGDKCDSNEDIDEDGHQNNLDNCPYVSNANQADHDKDGKGDACDHDDD
NDGISDDKDNCRLVFNPDQVDTNGDGRGDACQFDFDADKIPDVDDVCPENVEISQTDFRK
FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNGVDFSGTFFINTERD
DDYAGFVFGYQSSSRFYVVMWKQITQTYWDTTPTKAQGYSGLSIKVVNSTTGPGEHLRNA
LWHTGNTTGQVHTLWHDPRYTGWKDFTAYRWHLIHRPKTGFIRVVMYEGKKIMADSGPIY
DKTYAGGRLGLFVFSQEMVFFSDLKYECRDSYTGGN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttgcggccgttttcgcccttctgctactgaccgcttgcgcaagcagtcat
atccaagatactgtgtcggatgataacagtgtgtttgatctctttgaattggctggtttc
agtcgcaagggtccaggacgcaaacttgggggagtgtatttggtgaagggccctgacccc
tccagccctgccttccggattgagaatgctgacttgatccctgcactgcctgatgaaaag
ttccaggacttgattgatgctatccatagggagcgaggttttatcctaatggccagcctg
cgccaggccaagaagactcgaggcacccttttggcagtggagcggcgggatgactccagg
cacatctttaatctagtatcgaatggccgggcaggcaccctagacatcactcttagtgga
gagggcaagcagcaagtggtatcggtggaagataccctcctagccacaggacactggaag
aatattacactctttgtagaggaagatcgagctcagctttatgtgggttgtgagaaaatg
gagaatgctgaattagatattccaatccagaacatcttcagccgggatctggctaacatt
gcaaggctcaggatagccaaaggaggagtacaggacaattttcagggggtggtgcagaat
ctacgttttgtgtttggaaccagcctcgaaaccatcttgaggaataaagggtgctccagc
acaacaaaaaatgcaataattacattggacaaccctatcaatggctctagtccagcaatc
agaacaagttacactggccacaagacaaaaaatatggaggcaatgtgtgggttttcctgt
gatgaaatgaccagcatgttcctggagatgcgaaggctgcagactattgttgtgtctgtc
caggaaacagtccagaaaatgacggaaaaaaatgaactgcttactggacgagtttgtgtt
cacaatgggattcagcatgaacacagagaggaatggagggttgacagttgtacagagtgc
acatgccagaattctgccactatttgccgaaaaatatcctgtcccctgataacctgctca
aattccacaatacccgacggggagtgctgcccaagatgttggccaagtgactctgcagaa
gacgattggtctccgtggtctgaatggacaccttgctccgttacttgtggcaatgggatt
caacaaagaggacgctcatgtgacagtctcaataaccgctgtgaaggttcttccatgcag
acccgaagttgccacttgcaggagtgtgacaaacgcttcaagcaggatggaggttggagt
cattggtctccatggtcttcatgttctgttacctgcggcagtgggcagatcaccaggatc
cgcctctgtaattctccacgtccccagatgaacggcaaagactgtcgaggagaagccaga
gagaataagccttgccagaaagacccttgccctatcgatggacagtggggaccctggtca
ccctgggatagctgcacgcttacttgtgctggaggcattcagaagcgtgggcgtctgtgc
aataatcctgagcccaaatatggaggaaaggactgtttaggagacatcttggacactcag
atttgtaataagcaagactgcccaattgatggatgtctttccaatccttgttttgcgggg
accaaatgtaccagcttccctgatggttcttggaagtgcggtgcttgtcctcttggttac
caaggaaatggacttcagtgtcatgacattgatgagtgtaaagaagttccagacacctgt
tttgtgcacaatagtgttcacagatgtgaaaatactgagcctgggtacaactgccttccc
tgcccccctcgttttactgggacacagccatttggcaaaggtattgaagaagccacagca
aaaaaacaggtctgtaagccacagaatccctgcactgatggaacccacacctgcaataag
aatgctcgatgcatttatcttggcgtttacgcagatccaatgttccgatgtgaatgcaaa
ccaggctatgccggaaatggtatcatctgtggtgaagacacggatcttgatgggtggcca
aatgagaatcttgtttgtgttgctaatgctacgtatcactgcaaaaaagataactgccca
aaccttcctaactctggccaggaagattacgacaaggatgggactggtgatgcctgtgac
agtgatgatgacaatgatggaatcactgatgacagggataactgtgcattcatatacaac
ccccagcaatatgactatgatagggatgaagtgggtgaccgctgtgacaactgcccttac
aatcacaacccagatcaaacagacacagataacaatggcgaaggagatgcctgtgctgta
gatatcgatggggacggtgttctgaatgagaaagacaattgtgcctatgtacataatgtt
gaccagagagatacagacatggatggtgtcggagaccattgtgataactgcccaatggag
cacaatccagagcagactgattcagattccgacctcattggagataagtgcgatagcaat
gaggacatagatgaagatggccatcaaaataacttggataattgcccctatgtctccaat
gccaatcaagctgatcatgacaaagatggcaaaggtgatgcctgtgaccatgatgatgat
aatgatggaatctctgatgataaggataactgcagattggttttcaatccagaccaggtt
gacaccaatggtgacggacgtggtgatgcttgtcaatttgattttgatgctgataagatt
ccagatgttgatgatgtctgccctgagaatgttgaaattagtcagactgacttccgcaaa
ttccagatggttccattggatcccaagggcacatctcagattgatcctaactgggtagtt
cggcaccagggcaaagaactagttcagacagtcaactgtgaccctggcattgctgttggt
tttgatgagtttaatggtgtggactttagtggcacattcttcataaacacagaaagggat
gatgattatgccggttttgtgttcggttatcaatccagcagtcggttctatgtagtaatg
tggaagcagatcacacagacctactgggacactacaccaaccaaagctcaggggtactct
ggcctctcaatcaaggtggtcaactccaccacaggtcctggagaacacttacggaatgct
ctgtggcatacaggaaacaccactgggcaggttcatactttatggcatgacccacgttac
acaggctggaaagattttactgcctatagatggcatctcatccacagaccaaagactggt
ttcattagggttgtaatgtatgaaggaaagaaaatcatggcagattctggacccatctat
gataagacatacgctggtggccgcttaggattatttgtcttctctcaagaaatggtcttc
ttttctgatcttaaatatgaatgtagagattcctatactggaggaaattaa
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