Geotrypetes seraphini (Gaboon caecilian): 117365291
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Entry
117365291 CDS
T09159
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
gsh
Geotrypetes seraphini (Gaboon caecilian)
Pathway
gsh03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gsh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117365291 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gsh03000
]
117365291 (KDM2B)
04121 Ubiquitin system [BR:
gsh04121
]
117365291 (KDM2B)
03036 Chromosome and associated proteins [BR:
gsh03036
]
117365291 (KDM2B)
Enzymes [BR:
gsh01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117365291 (KDM2B)
Transcription factors [BR:
gsh03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117365291 (KDM2B)
Ubiquitin system [BR:
gsh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117365291 (KDM2B)
Chromosome and associated proteins [BR:
gsh03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117365291 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117365291 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
Motif
Other DBs
NCBI-GeneID:
117365291
NCBI-ProteinID:
XP_033811429
UniProt:
A0A6P8S0U7
LinkDB
All DBs
Position
8:157064939..157401294
Genome browser
AA seq
1268 aa
AA seq
DB search
MEAEKESGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLDEKLSSGAYNGNFVHSMEGKD
FTYEYVQREALRVPLLFITKDGLGINMPDPDFSVRDVKLLVGSRRIVDVMDVNTQKGIEM
SLSQFVRYYETPETEREKLYNVISLEFSHTKLEHVIKRPTVIDLVDWVDNMWPQHLKEKQ
TEATNSISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ELYEEWVLSGKQSDIFLGDRADGCQRIELKQGYTFFIPSGWIHAVYTPIDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQAKFRYPFYYEMCWYVLERYVHCLTKKSHLIREYQKASMLI
DVTRKPSIDSFSSDSWVDMDEGSCEAHAHEEKDDNTEKSLKSSADGCSSPNSTHSEGREA
AGLKPKETGMRYLKRTLSNESNDSMKSTTPIDYPKTPTGSPATEVATRWTHLTEFELKGL
KALVEKLESLPENRKCVPEGIENPQALLEDMKAVLKEHVEDEQNLAISGIPIVAWPKKAI
KNRAVGRPKGKIGTTSAVKLAANRTTAGARRRRTRCRKCEACLRTECGACHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEQEGQKFNIMLMECSICNEIIHP
GCLKVKESDGVVNDKVPNCWECPKCNHAGKSGKVSLEMCTRQPSNAYKQKRGPGFKYASN
LPGSLLKEQKLNRDNKEIREMEREETPKRKSEEPPKKKPLDSILRRKSDEVYLRRKRKFE
KPPDPTIRKRLKLVKEEKLFRKKRKLWKTPDDRTVLAKMLRHVKQEPEEDMPEAPPKARE
SDQSRASSPTAGPSTEGAEPNEKKKAKRRKRRLPNKELSKELSKELNQEIQKTENSLANE
NHQLIKSEPESENEEPKRSFSSSEKLHRFSKELNGSPIELRHQIVPNLRSTPRVITRPAP
ALSPPKCIQMERHVIRPPPISPPPDSLPLDGGEAHVMQREVWMAVFSYLPHRDLCICMRV
CKTWNRWCCDKRLWTKIDLNRCKSITPLMLSGIIRRQPASLDLSWTNISKKQLSWLINRL
PGLRDLLLSGCSWIAASALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQIDN
RSKFRNIVELRMAGLDITDASLRLMIRHMPLLSKLDLSYCNHVTDQSINLLTAVGTTTRD
SLSEINLSDCNKVTDQCLTYFKRCGNICLIDLRYCKQVTKESCEQFIAEMSVIVQFGQTE
EKLLQKLS
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagaatctggaagaagattgcgctgtattggcagacgaagatacgac
gagaacgaagacctctcggacgttgaggagattgtcagcatccggagctttaatctggac
gagaagctcagcagcggcgcgtataatggaaatttcgtgcactcgatggaagggaaagat
ttcacctatgaatacgtacagcgagaagctcttagggttcctcttctcttcataactaag
gatggactggggattaacatgcctgacccggatttcagtgttagagatgtaaagctgtta
gttggaagccgtagaattgtggatgtgatggatgtcaatacacagaagggcatagaaatg
agcctgtctcagtttgtgagatactatgagactccagaaactgaaagagaaaagttgtat
aatgttatcagtctcgagttcagtcataccaaactggaacatgtaatcaagcgtccaact
gtgattgatttggtcgactgggtggataatatgtggccacagcacttgaaggagaaacaa
acagaagccacaaattccatctcagaaatgaagtaccctaaggtgaagaagtattgttta
atgagcgtcaaaggctgcttcacggatttccatattgattttggcggcacatccgtttgg
tatcacgttttccgtggagggaagatattttggttgattcctcctactctgcacaattta
gaactttatgaagaatgggtgttgtcaggaaagcaaagtgatatttttctgggagataga
gcagatggatgtcaaaggattgaactgaaacaaggttacacattcttcatcccatcaggg
tggatccatgctgtctatacgccaatagattccctcgtgtttggtgggaacattttgcat
agttttaatgttcctatgcagcttcgcatatatgagattgaagacaggacgagggtacag
gccaaatttcgatatccgttctactatgaaatgtgctggtatgtcctggaaagatatgtg
cactgtttgacaaagaaatcccatctcatcagagagtatcagaaagcatcaatgttaatt
gatgtaaccagaaaacccagtatagacagtttttcctctgattcctgggtagacatggat
gaaggatcgtgtgaagcacatgctcacgaggagaaggatgacaacacggaaaaaagcctg
aaatcctcagcagatggctgctcttcacctaatagcacacactctgaagggagggaggca
gcaggactaaaaccaaaagaaactggaatgaggtatctcaaaaggactttgtccaatgag
tcaaatgacagtatgaagtccacaaccccaatagactatcccaaaacaccaacgggctcc
ccagcaacagaggtggctaccaggtggactcatctcacagagtttgaactgaaggggctg
aaagcactagtagaaaaacttgaatcgctacctgagaatagaaaatgtgttccagaaggt
attgagaatcctcaggctctcctggaagacatgaaggctgtcctgaaagagcatgttgag
gacgaacagaatcttgcaatttctgggatcccaattgtagcctggcctaaaaaggctatt
aagaacagggctgtgggaaggccaaaagggaaaattggaaccacctctgctgtgaaattg
gctgcaaatcgtacgaccgctggggcccgcagacggagaacgcgatgccgaaagtgcgaa
gcttgccttcgtacagaatgtggggcgtgccatttctgcaaggatatgaagaagtttggg
ggaccaggaaggatgaagcagtcatgcattatgcgacaatgcattgctccggtgcttcct
cacaccgctgtctgtctggtttgtggagaagctgggaaggaggatacagtggagcaagag
gggcaaaagtttaatattatgttaatggaatgttccatttgtaatgaaataatacaccca
ggatgccttaaggtcaaggagtcagatggtgtagtcaatgacaaagttccaaattgctgg
gaatgtccaaaatgcaaccatgcaggaaaatccgggaaagtgagtttagaaatgtgtaca
cggcagccttcaaatgcctacaagcaaaaaagaggaccaggattcaagtatgcatccaat
ctcccaggctctctactgaaggagcaaaagctgaaccgagataacaaagagatacgagaa
atggaacgggaggagactcccaagcgcaagtcagaagagccccccaagaagaagcccctg
gattccattttgaggagaaaatctgacgaggtgtacctacgaaggaagaggaaatttgag
aagccaccagatcccactatcaggaagcggctaaaacttgttaaagaagaaaagctcttc
aggaaaaagaggaaattgtggaaaactccagatgaccgtacagtccttgccaaaatgttg
cggcatgtgaagcaagaaccagaggaagacatgcctgaagcaccacccaaagcaagagag
agcgaccagtcaagagccagctctccaacagcaggccctagcactgagggggcggaacca
aatgagaaaaagaaggccaagaggcgaaaacggaggctccccaacaaagaactgagtaag
gaattgagcaaggagctgaatcaggaaattcaaaaaactgagaatagccttgcaaacgag
aaccaccagctcatcaaatctgagccagagagtgaaaatgaggaacccaaacggtccttc
agcagtagcgagaaactgcacaggtttagcaaagaactgaatggatccccaatagagctt
aggcatcagattgtccctaatctccggagcaccccaagagtgataacacgcccagcccca
gccttatcgcctcccaaatgtattcagatggagcgccatgtaataagacctccacctatt
agtccacctccagactctttacctttggacggtggtgaagctcatgtcatgcaaagggag
gtgtggatggctgtatttagctacctccctcacagagacttgtgcatatgtatgagagtc
tgcaaaacctggaacagatggtgctgtgataaacgattgtggaccaaaatagatttaaac
cgctgtaaatccatcacaccacttatgcttagtggcattattagaagacagcctgcatcc
ttggacctcagctggacaaacatatccaaaaaacaactgagctggcttatcaacagactt
ccaggtcttcgagacttgttgctctcgggatgctcctggattgctgcttccgcattatgt
agttccagttgtcctttactcagaactctggatgtccagtgggtggaaggtctaaaagat
gctcagatgagagaccttttatccccaccaacagacaacagaccaggtcagattgataac
cgcagtaaattccgcaacatcgtggagctgcgtatggctggcctggatatcacggatgct
tcactgcgactaatgatccgccacatgccacttttgtctaagctcgacctcagttattgt
aaccatgtgacagatcagtctatcaaccttctcactgcagtgggaaccaccacgcgagat
tccttatcagagatcaatttatcagactgcaataaagttactgaccagtgcctgacctat
tttaaacgttgtggaaatatctgtttaattgacttaaggtactgcaagcaggtaacaaag
gaaagctgtgagcagtttatagcagagatgtctgtgattgtacagtttggacaaacggaa
gaaaaactcttgcaaaagttaagctga
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integrated database retrieval system
