Gordonia sihwensis: P5P27_13500
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Entry
P5P27_13500 CDS
T08972
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gsi
Gordonia sihwensis
Pathway
gsi03030
DNA replication
gsi03410
Base excision repair
gsi03420
Nucleotide excision repair
gsi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P5P27_13500 (ligA)
03410 Base excision repair
P5P27_13500 (ligA)
03420 Nucleotide excision repair
P5P27_13500 (ligA)
03430 Mismatch repair
P5P27_13500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsi03032
]
P5P27_13500 (ligA)
03400 DNA repair and recombination proteins [BR:
gsi03400
]
P5P27_13500 (ligA)
Enzymes [BR:
gsi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P5P27_13500 (ligA)
DNA replication proteins [BR:
gsi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P5P27_13500 (ligA)
DNA repair and recombination proteins [BR:
gsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P5P27_13500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P5P27_13500 (ligA)
MMR (mismatch excision repair)
DNA ligase
P5P27_13500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P5P27_13500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
WFN91787
LinkDB
All DBs
Position
complement(2801490..2803598)
Genome browser
AA seq
702 aa
AA seq
DB search
MSEGEGTDTAGSAAAEAGADWAREWALLAEEVRGHQFRYYVQDAPVISDGEFDSLLRRLQ
ALEDEHPELAVPDSPTKLVGGGFSTDFTSVDHLERMMSLDNVFDYDEMRTWVSRTEAEIG
AGTEFLCELKIDGVALSLVYEKGRLVRGVTRGDGRTGEDVTLNARTITDVPHDLDDSVRP
VPELLEVRGEVFFRVEDFQNLNASLVEEGKPPFANPRNSAAGSLRQKNPQVTARRRLRMI
CHGIGKVEGWRPESLHEAYLALGEWGLPVSDHTKKVTGADEIIEAIAYWGENRHSVEHEI
DGLVVKVDDVTRQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIMVGVGRTGRVTPWALME
PVLVAGSTVSRATLHNAFEVKRKGVLIGDTITIRKAGDVIPEVLGPVVELRDGTEREFVM
PTRCPECGTELAPAKEGDKDIRCPNQRYCPGQLRERLFYLAGRGAFDIEALGYEGAQALL
SSGVLTDEGDLFSLTADDLVKTDLYTTKSGALSANGRRFLDNLDKAKRVPLWRVIVALSI
RHVGPTPARALATAFGDLESIQNASVDELAQVDGLGPTRAASVHDWFAVDWHREIVAKWR
AAGVAMADERDESIERTLDGKTIVVTGSLVDFSRDGAKEAIIVRGGKASGSVSKKTDYVV
VGDSPGSKAAKAEELGVPILDEDGFKQLLATGSAGESESEDD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagggcgaggggacagacacggcgggatcggccgcagcggaggcgggcgccgat
tgggcgcgggagtgggcgctgctcgccgaggaggttcgcgggcatcagttccgctactac
gtccaggacgcgcctgtgatcagcgacggagagttcgactcgctgttgcgccggctgcag
gcactcgaggacgagcatcccgaactggcggtgcccgattcgccgacgaagctggtcggc
ggcggcttctcgaccgacttcacctcggtcgaccatctcgaacggatgatgtcgctcgac
aacgtcttcgattacgatgagatgcgcacctgggtctcgcgtaccgaagccgagatcggc
gccgggaccgagttcctgtgcgaactcaagatcgacggggtcgcgctctcgctggtgtac
gagaagggcaggctggtccggggagtgacccggggcgacggccgcaccggcgaggacgtg
acactcaacgcgcgcaccatcaccgacgttccgcacgatctcgacgactcggtgcgcccg
gtgcccgaactcctggaggtccgcggtgaggtgttcttccgagtcgaagacttccagaat
ctgaacgcctccctcgtcgaagaggggaagccgccgttcgcgaatccgcgcaactcggcc
gccggctctctgcgccagaagaatccgcaggtcaccgcgcggcgccgactccggatgatc
tgtcacgggatcgggaaggtggagggctggaggcccgagtcgctgcacgaggcctacctc
gcgctgggcgagtgggggctgcccgtctccgaccacacgaagaaggtgaccggggccgac
gagatcatcgaggcgatcgcgtactggggcgagaaccggcactcggtggaacacgagatc
gacggcctcgtcgtcaaggtggacgatgtgacgcgccagcgccggctgggtgcgacctca
cgcgcaccgcgctgggcgatcgcgtacaagtacccgccggaagaggtcacgaccaaactg
ctcgacatcatggtcggcgtcggacggacgggccgcgtcacgccgtgggcgctgatggaa
ccggtgctggtcgcgggatcgaccgtctcccgcgcgacactccacaacgccttcgaggtg
aagcgtaaaggcgtcctgatcggcgacaccatcaccattcgcaaggccggcgacgtgatt
cccgaggtgctcggtccggtcgtcgaactgcgcgacggtaccgaacgcgagttcgtgatg
ccgactcgatgccccgagtgcggaaccgaactggcccccgcgaaggagggcgacaaggac
atccgctgtcccaaccagcgctactgcccgggacaactgcgcgaacggctgttctatctc
gcgggccgcggcgcattcgacatcgaagcgctcggatacgaaggggcgcaagcacttctg
tcgagcggcgtgctgaccgacgaaggcgacctgttctcgctcactgccgacgatctggtc
aagaccgacctgtacaccacgaagtcgggtgcgctctcggccaacggtcggcgattcctg
gacaacctcgacaaggccaagcgggtcccgctgtggcgggtgatcgtcgcgctgtcgatc
cgccacgtcgggcccaccccggcgcgggctctggccaccgctttcggcgacctcgaaagc
atccagaacgcctccgtcgacgagttggcgcaggtggacggtctcggccccacgcgggcg
gcgagcgtgcacgactggttcgccgtcgactggcaccgcgagatcgtcgccaaatggcgt
gccgcgggggtggccatggccgatgagcgggacgagtcgatcgagcggacgctcgacggc
aagacgatcgtggtcaccggttcgctcgtcgacttctcccgcgacggagccaaagaggcg
atcatcgtgcgcggcggcaaggcgtcgggctcggtgtcgaagaagaccgactacgtcgtg
gtcggcgactcgcccggcagcaaagccgccaaggccgaagaattaggcgttccgatcctc
gacgaggacggcttcaagcaattgctggcgaccgggtctgcgggagagtcggagtcggag
gacgattga
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