Glycine soja (wild soybean): 114387636
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Entry
114387636 CDS
T06057
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114387636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsj03400
]
114387636
Enzymes [BR:
gsj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114387636
DNA repair and recombination proteins [BR:
gsj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114387636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
TPGS1_C
AEP-like
Motif
Other DBs
NCBI-GeneID:
114387636
NCBI-ProteinID:
XP_028203643
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All DBs
Position
15:14567808..14587646
Genome browser
AA seq
1171 aa
AA seq
DB search
MTEQTKLSVLCSLFTWTQRSKSAAKKRAKFRKFLDAFCTDHNFFPAVRLLLPNLDRERGS
YGLKESVLATSLIDALGISRDSPDALRLLNWRKGGAATGPTAGNFALVASEVLQRRQGTA
SGGLTIRELNELLDRLASAENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWK
KLHGKDVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCILD
GEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSLIHQTLKERH
EILCKIVRPVKGRLEILVPNAGINSHISSGEPCWSFIAHNVDEVERFFKETIENRDEGIV
LKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
SPNTHPKQFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPD
VWVDSPEKSIILSITSDIRTIESEVFSAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVH
SSNGTTQRDTEYGSKQDSKPKRSKSSTRGEKKNLSIVPSHLIQTDVSSIKGGSLIFSNMM
FYFVNVPLSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYS
WVLDCYDQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDTYYLDLDLGVIKQLLSNIDRS
EDVSTVDHYRKKYCPKDKWSFFYGCSIYFHSAIPSLKSDWHFILQLAVRRLKLEVLMGGG
KVTSNLTCATHLVVLLVPGYQTDFEQIQSSFTSVKRKILRSKRLHIVKSQWLEDCSDSCQ
RLPEDSYSLKPWGIEETTAEDCELELGLEAHQSGDNVEDQNISFSDKGIQQRSSKAASED
SMALVSQEKGGKRKRGRPAGSGIKKVKQPAVKQARRARPQIAKKPAKICEYESSDESDSH
GKRPIEQEIDTRAGSLDFYKKRSEPQETEKRENVQVAEIEKNSEQNKLDKQKDLNDNERE
RMLVPEIEMSDRHNEQNNEVTEKLEISADPLQAMLFDMIPSLATQKVEQPMNRSVREEKL
PETSNAEAEPMTTKKKKVSYKDVASELLKDW
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacggagcaaaccaagctgagcgtgctctgcagcctcttcacgtggacacagcggagc
aagtctgcggcgaagaagcgcgccaagttccgcaagttcctcgacgccttctgcaccgac
cacaacttcttccccgccgtccgcctccttctcccgaacctcgaccgcgagcgcggctcc
tacggcctcaaggagtccgtcctcgccacctccctcatcgacgccctcggcatctcccgc
gactcccccgacgccctccgcctcctcaattggcgcaagggcggcgccgccaccggcccc
accgccggcaatttcgccctcgttgcctccgaggtgctgcagcgtaggcaggggacggct
tcgggtggattgacgataagggagctgaatgagttgcttgaccggttggcttccgctgaa
aacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacaggaa
atgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaaagc
atttttcatgaattccatcctgatgcagaagacttgtttaatgttacctgtgacttaaaa
ttagtatgtgaaaagctaagggatcggaatcaacgtcataagcggcaggatattgaagtt
ggaaaagctgtgcgcccccaattagctaagagagttgctaatgcaactgaagcatggaag
aagcttcatgggaaggatgtggttgttgagtgcaaatttgatggtgaccgcattcaaatt
cataaaaatggaactgaaatacatttcttctcaaggaactttatcgatcattctgaatat
gcacatgcgatgtcagaaatcataatacaaaatgttcttgttgataggtgcatccttgat
ggtgaaatgttggtgtgggacacatccttgaaacgttttgctgagtttggctcaaaccag
gaaatagccaaggcagcaagagatggtcttgatagtgatagacagttatgctatgttgca
tttgatatcctttattttggagatactagtttgattcaccaaactttgaaggaacgacat
gagattttgtgtaaaattgtaaggccagtgaagggtcgtttggaaattttggtacctaat
gctggtatcaacagtcatatttcttctggtgaaccttgttggtcatttattgctcataat
gtggatgaagttgagagattttttaaagaaaccattgaaaatagagatgagggaattgtt
ttaaaagaccacagctccaaatgggaacctagtgatcgtagtggaaagtggctaaaattg
aagcctgaatacattcaagctggctctgatctggacgtacttatcattggtggctactat
ggctctggacgacgtggaggagaggttgctcaattcttggttggccttgctgagcgtcca
tccccaaatacgcaccctaagcaatttatctccttttgcagagttggtactggactctct
gatgatgagcttgatgctgtagtgaccaaactaaaaccttacttcagaaagtatgaatat
ccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaagaaagacctgac
gtgtgggttgatagccctgagaaatcaattattctgtctataaccagtgatattcgaact
atagaatctgaggtattttctgcaccttacagtctcagatttcctaggattgacagggtg
agatatgacaaagcttggtatgaatgccttgatgttcaatcatttatagaactggtacat
tctagcaacggtaccacacagagggatacagaatatggcagcaaacaggacagtaaacca
aaacgatcgaaatcctccactaggggagaaaagaaaaacttgtccattgttccttctcat
ttaattcaaactgatgtttccagcattaaggggggctccttaatattttcaaatatgatg
ttctattttgttaatgtgcctctatctcattctctcgagtccttgcacaaaataattgct
gagaatgggggaactttttcaatgaatttgaataactcagtcacgcattgtgttgcagca
gacagcaaggggtttaaatttgaagcagcaaagcgtcatggtgatatcattcattattct
tgggtattagattgctatgatcaaaagaagcttgtctgcttacagcctaagtacttcctt
tttctatctgaactgacaaagaagaagttacaagaagaaattgatgagttctcagacact
tactacttggaccttgatcttggagtcatcaagcagctcttaagcaatattgataggtca
gaagatgtcagcactgttgatcattataggaaaaaatactgcccaaaggataagtggtct
ttcttttatggatgctccatttatttccactctgcaataccttcattgaaaagtgattgg
cattttatattgcaacttgctgtgaggagattgaagcttgaagttctcatgggtggtgga
aaagttacctctaatcttacttgtgcaacccatttagttgtcttgcttgtgccaggatat
cagactgactttgaacaaatacagagtagtttcacttcagtaaaaagaaaaattctccga
agcaagaggttgcatatagttaaatcccagtggttagaagattgttctgacagttgccaa
agattaccagaagactcctacagtttgaaaccctggggaatagaagagacaactgctgaa
gattgtgaactggagttggggttagaggctcatcagagtggagataatgtagaagaccaa
aatatttctttctccgacaagggaattcaacagaggagttcaaaagctgcaagtgaagac
agtatggctttggtatctcaagagaagggtggcaaaagaaaaagaggaagacctgcaggc
agtggtatcaaaaaagtaaaacaaccagctgtcaaacaagctcgaagagcacgaccacaa
attgcaaaaaagcctgctaaaatatgtgaatatgaatcgtcagatgaaagtgattctcat
ggcaaaagaccaattgagcaggagattgacacgagagcaggaagtcttgatttttacaag
aaacgttcagaaccacaggagactgagaaacgggaaaatgtccaagttgctgagattgag
aaaaattctgaacaaaataagttagacaagcaaaaggacttgaatgacaatgaacgtgaa
agaatgttggttcctgaaatagaaatgtctgataggcacaatgagcaaaacaatgaggtg
actgagaaactagaaatttcagctgaccccctgcaagcaatgttatttgacatgattcct
agccttgccacccaaaaagtcgagcaaccgatgaatcgaagtgttagagaagagaagcta
ccagaaacctccaatgcagaagcagagcctatgactacaaagaaaaagaaagttagctac
aaggatgttgccagtgagctgctgaaggactggtag
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