Glycine soja (wild soybean): 114399239
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Entry
114399239 CDS
T06057
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
gsj
Glycine soja (wild soybean)
Pathway
gsj04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
gsj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
114399239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsj03019
]
114399239
Messenger RNA biogenesis [BR:
gsj03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
114399239
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
114399239
NCBI-ProteinID:
XP_028217181
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All DBs
Position
19:48997759..49010268
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AA seq
958 aa
AA seq
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MGVPAFYRWLADRYPLSITDVVEEDPSAGAVDVSKPNPSGMEFDNLYLDMNGIIHPCFHP
DGKPAPATYEDVFKSIFDYIDHIFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDA
AEKDAAEAEAEIERLREEFEGEMKLLSSKDKPETYDSNVITPGTPFMGVLSVALQYYIQT
RLNYNPGWWNTKVILSDSNVPGEGEHKIMDYIRLQRNLPGFNPNTRHCLYGLDADLIMLS
LATHEVHFSILREVITFPGQQEKCFQCGQLGHFAAECRGKPGEKAEDWNPVDDTPIHKKK
YQFLNIWVLREYLQYEMEIPNPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAL
NLLMHIYRKEFTAMGGYLTEAGEVFLERVEHFIQSVAVHEDQIFQKRVRIQQATEINEEM
KARARGDMPGEPRASVLDKVKLGEPGYKERYYAEKFGALDPEKIDKIKKDTVLKYVEGLC
WVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSS
ALPKKYRDLMIDPSSSILQFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLSATSKLEAT
LTEEEQLRNSKMLDLLYVSSAHNLAPHILSYYQYSCQLPLHERPAQPIDPRVSSDGMNGY
LWLYERNVLRTIVSSPIKGLQDIEFNQVLNITYLNPRKHRHIPKAPDGVLMPKKILKAID
IKPFPVLWHEENSGRRQGRERQVHGAMAGPQLGEAAHRLVKNSLNIKSNNMPYGSPEQFP
GHHAMNRLRSAGPSGYGKYYVEDKSGYYGQQNNHQGMITRPRYPVSSNGGNNEKQNFRIQ
DRSQHHEQYYNGRTGFHTMTMEEGARPRPYAVPSPRTQVVMLSRSPNSGPTTNGQHQFVQ
NMGPPIPPPNWITRAPDTNGIYAWHQETALGGAYDKQHIKVYQAKTRQPQDMPEYGNQ
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgcggatcggtacccgctctcgatcaccgac
gtcgtggaggaggatccctctgccggcgccgttgatgtgtctaaacctaatcccagtggc
atggagttcgacaacttgtacttggacatgaacggcatcattcacccctgttttcaccct
gatggcaagccagcacccgctacctacgaagatgtattcaaatcaatctttgactacatt
gaccatatattttcattggttcgcccaaggaagcttctttatcttgcaatcgatggtgtt
gcaccaagagccaaaatgaatcaacaacgttcacggcgtttccgagccgcaaaagatgca
gctgagaaagacgcagctgaggctgaagctgaaattgaaagacttagggaagaatttgag
ggtgagatgaaactcttgtcttctaaagacaagccagagacttatgattcaaatgtcatt
acccctggcactccatttatgggagtgctgtcagtggctcttcagtattatatacagact
agattgaactacaaccctggctggtggaatacaaaggttatactttctgattcaaatgtt
cctggtgagggagaacataaaataatggattacatacgattacagcgtaaccttcctggg
tttaatccaaatactcgtcactgtttgtatggattggatgctgatttaattatgttgtcc
ttagccacacatgaggttcatttctcaatattgagggaggtaatcactttccctggacaa
caggagaagtgttttcagtgtggccaacttggccattttgcagctgaatgtcgtggtaag
ccaggtgagaaagctgaggactggaatccagttgatgataccccaattcacaagaagaaa
tatcagtttcttaacatctgggtgctgcgtgaatatttgcaatatgaaatggagattccc
aaccctccttttgagattgactttgaacgcatagtggatgattttgtatttctatgcttc
tttgttggcaatgactttcttccacatatgccaacattagagatccgtgagggggcttta
aatttattgatgcatatttacagaaaagaattcaccgccatgggtggttatcttactgaa
gcgggtgaggttttcttagagagagtagaacattttattcagtctgttgctgttcatgaa
gatcaaatatttcagaaacgagttcggattcaacaggctacagaaattaatgaagagatg
aaagctagggcaagaggagacatgcctggagaaccacgtgcttcagttttggacaaggtt
aagttaggagagcctggatacaaggaaaggtattatgctgaaaaatttggtgcattggat
ccggagaagattgacaaaatcaagaaagatacagtcttaaaatatgtagaaggcctttgt
tgggtttgtcggtactactaccagggtgtctgctcatggcaatggtactacccataccat
tatgctccttttgcttctgatcttaaagatctagctgatctggagataacattttttttg
ggagaaccatttaaaccatttgatcagctaatggggaccctacccgcttcaagttcaagt
gcactgcctaaaaaatatagggatttgatgattgatccttcatcatctattcttcaattc
taccctgctgattttgagattgacatgaatggaaaacgatttgcatggcagggtgttgcc
aagttgccattcattgatgagaagaaattgctttctgccacaagcaagcttgaagccaca
ttaacggaggaagaacagctccgaaatagtaagatgcttgatttgctctatgtcagcagt
gcgcataatttggctccacatatcttatcatattatcaatattcttgtcaattgcctctg
catgaaagacctgctcaaccaattgatccaagagttagcagtgatggtatgaatggatat
ctctggttgtatgaaaggaatgtgctcagaaccattgtatcctctcctatcaagggattg
caagacattgagtttaatcaagttttaaacattacttatcttaatcctcgtaaacataga
catattccaaaagctccggatggtgtactaatgccaaaaaagatattaaaagccattgat
attaaaccttttcctgtgttatggcatgaagagaatagtggtcggcgacaaggcagagaa
agacaagtacatggagcaatggctggccctcaactgggagaagcagcacatcgtcttgtc
aagaactcccttaacattaaatcaaataacatgccgtatggatcaccggagcagtttcct
ggccatcatgcaatgaaccggctcagatcagctggcccttctggatatggaaaatattat
gtcgaggacaaaagtggttattacggacaacaaaacaatcaccaggggatgataactagg
cctagatatccggtctcatctaatggtggaaataatgagaaacagaattttaggatacag
gataggtcacagcatcatgaacagtactacaacgggagaactgggtttcatactatgaca
atggaggaaggtgcaagacctaggccatatgcagtgccttcgccaaggacacaggtggtg
atgttatcgaggtcacccaattcagggccaacaactaatggacaacaccaatttgtgcag
aacatgggtcctcctataccacctccaaattggattactagagcaccagatacgaatgga
atatatgcttggcatcaagaaactgcattgggaggagcttatgataagcagcacataaag
gtgtaccaagctaaaactcgacaaccccaagacatgccagagtacgggaatcaatag
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