Geobacter sulfurreducens KN400: KN400_0871
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Entry
KN400_0871 CDS
T01940
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gsk
Geobacter sulfurreducens KN400
Pathway
gsk03030
DNA replication
gsk03410
Base excision repair
gsk03420
Nucleotide excision repair
gsk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KN400_0871 (ligA)
03410 Base excision repair
KN400_0871 (ligA)
03420 Nucleotide excision repair
KN400_0871 (ligA)
03430 Mismatch repair
KN400_0871 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsk03032
]
KN400_0871 (ligA)
03400 DNA repair and recombination proteins [BR:
gsk03400
]
KN400_0871 (ligA)
Enzymes [BR:
gsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KN400_0871 (ligA)
DNA replication proteins [BR:
gsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KN400_0871 (ligA)
DNA repair and recombination proteins [BR:
gsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KN400_0871 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KN400_0871 (ligA)
MMR (mismatch excision repair)
DNA ligase
KN400_0871 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KN400_0871 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
E1-E2_ATPase
BRCT_2
HTH_45
Motif
Other DBs
NCBI-ProteinID:
ADI83734
LinkDB
All DBs
Position
complement(925933..927945)
Genome browser
AA seq
670 aa
AA seq
DB search
MDKQTAADRVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAAPDSP
TQRVGGAPLDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCEPKM
DGLAVELVYERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGEVYL
PLAAFQRLNAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGASFA
AQTEFLDRIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSFALQ
RELGEKSRSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVSRAT
LHNWEEMERKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLPIPAVCPECGSEVVK
IPDEVAVRCMGLSCPAQIRESIIHFASRDAMDMEGLGEKYIEQLLRLGLVKNVADLYTLT
KDQFMQFDRMGDKLAENLLNAIEASKQRELSRFIFALGIRHVGEHTAKLLAGAFGSIENL
ERATEEELLSIREVGPQVARSIITFFRNEGNRETIRRMFKAGVRPTAEEKKVGGRFTGKT
FVFTGALTRFSRPEAQKMVEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTE
DEFLAMLEEG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcagaccgccgcggaccgcgttgccgcactccgcactgaacttgagcgccac
aaccgcctctactacgcggaagaccgccccgagatcaccgacgccgaatacgatctcctc
ttccgcgaactggtggacctggaaacgcggttccccgacctggccgctcccgactcccca
acgcaacgggtgggcggcgcgcccctggacaagttcgagcaggtcacccaccgcatcccc
atgctctccctggaaaacgcctttacggacgtcgagatcgctgacttcgacgaccgggtc
aaacgcttcctggggctccacggcgacgtggaaatcgattacgtctgcgaacccaagatg
gatgggcttgccgtggaactggtctacgagcgcggcatcctcaccgtcggctccacccgg
ggcgacggcgtggtgggggagaacgtcacccacaacctgaagaccgtccggggcatcccc
ctccgactccggtgcgagcagccgccggaattgctggaggtgcggggcgaggtttacctc
cccctggccgcgttccagcggctgaacgcccagcgggaggaggagggggagccacccttt
gccaacccccgtaacgccgcggccggctccatccgccagctggactcccggatcacggcc
cggcgccccctggccatcttctgctacgcgccgggcgaggtccggggcgcctccttcgcg
gcacagactgaatttctcgaccggatcggcgaatggggcctgccggtcaatcccctgatc
cggccggtcaagggagtggcggagatcctcgcctactaccgggagatgaccgaacgccgc
gactcgctcccctacgagatcgacggcgtggtggtcaaggtggattcctttgccctccag
cgggagctgggagagaagagccgctccccccgctgggccgtggccgtcaagttcccgccc
cggcaggcggtgaccgtggtggaggacatcgtcccctcagtggggcgcaccggggtgatc
acccccacggccaacctcaggcccgtggaggtctccggcgtcaccgtctcccgcgccacc
ctccacaactgggaggagatggagcgcaaggacatccgcatcggcgacaccgtggtgatc
gagcgggccggcgacgtgatcccggccgtggtcaaggtcctgaccgaaaagcgttcgggc
agcgaacgcccccttcccatcccggccgtctgccccgagtgcggctccgaggtggtgaag
atccccgacgaggtggcggtccgctgcatggggctctcctgcccggcccagatccgtgaa
tccatcatccacttcgcctcccgcgacgccatggacatggaggggctgggcgagaaatac
atcgaacagctcctgcggctgggcctggtaaagaacgtggccgacctctacaccctcacc
aaagaccagttcatgcagttcgaccggatgggggacaagctggccgaaaacctcctgaac
gccatcgaggccagcaagcaacgggagctctcccgcttcatcttcgccctgggcatccgc
cacgtgggggaacacacggcaaaactcctggccggcgccttcggcagcatcgaaaacctg
gagcgggccaccgaggaggaactcctctccatccgcgaggtgggcccccaggttgcccgg
agcatcatcaccttcttccgcaacgaggggaaccgggagaccatccggcggatgttcaag
gccggggtccggcccacggcggaggagaaaaaggtggggggccgcttcaccggcaagacc
ttcgtcttcaccggggcgctcacccgcttcagccgccctgaggcccagaagatggtagag
aaggaggggggccacgcggccgggtccgtctcgaaaaagaccgactacgtggttgccggc
gccgaggccggcagcaagctggacaaggcccgccagctgggagtcagggtgctgaccgag
gatgaattcctggcaatgctggaggagggatag
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