Gracilibacillus salinarum: MUN87_17350
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Entry
MUN87_17350 CDS
T09433
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gsm
Gracilibacillus salinarum
Pathway
gsm03030
DNA replication
gsm03410
Base excision repair
gsm03420
Nucleotide excision repair
gsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUN87_17350 (ligA)
03410 Base excision repair
MUN87_17350 (ligA)
03420 Nucleotide excision repair
MUN87_17350 (ligA)
03430 Mismatch repair
MUN87_17350 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsm03032
]
MUN87_17350 (ligA)
03400 DNA repair and recombination proteins [BR:
gsm03400
]
MUN87_17350 (ligA)
Enzymes [BR:
gsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUN87_17350 (ligA)
DNA replication proteins [BR:
gsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUN87_17350 (ligA)
DNA repair and recombination proteins [BR:
gsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUN87_17350 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUN87_17350 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUN87_17350 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUN87_17350 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
HHH
BRCT_2
HHH_8
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UOQ84439
LinkDB
All DBs
Position
3691877..3693889
Genome browser
AA seq
670 aa
AA seq
DB search
MTEQEAHQQLEALRDELNEYNYQYHVLDNPTVSDAEYDQKMKQLTSIEAEYPSLITADSP
SQRVGGEPLDAFEKVAHRVPMLSLGNAFNEEDLRDFDRRVREGLATENVTYVCELKIDGL
AISLRYQDGLFVQGATRGDGTTGEDITSNLKTIRSIPLRIKDASSIEVRGEAYMPQQSFL
SMNEAREANQEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYAVGEWESGSLETHSDRL
EYLQQLGFKTNPEWRKCQGIDEVIQYVEAWVEKRANLSYDIDGIVIKVNNLEAQEQLGFT
AKSPRWAIAYKFPAEEAVTKLIDIELSVGRTGVVTPTAILEPVKVAGTTVQRASLHNEDL
IQEKDIRIGDTVVIKKAGDIIPEVVRVVEDMRTDEQKPFTMPDICPSCGDEVVRLEEEVA
LRCINPNCPAQLQEGLIHFVSRLAMNIDGLGEKVIEQLFQASYIHTIADLYRLERDELLK
LERMGEKSVQNLLTAIEQSKENSLERLLFGLGIRFVGSKAARTLAEHFETMDHLEKATFE
DLVAVDEIGDKMADSIVTYFADEKVTQLIRELKELGLNMSYKGAKASDAPSDSVFSGKTV
VLTGKLEIFSRQEAKQRIEALGGNVTGSVSKKTDLLIAGEDAGSKMDKAKKLEIEIWDEA
KLQEVLGEEA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaagaagcacatcaacaactagaggcattacgagatgaattgaacgaatat
aattaccaataccatgtactggataacccaacggtttcagatgctgaatatgatcaaaaa
atgaaacaactaacaagtattgaagcggaatatccatcgttgatcacagcggattctcct
tctcaacgagtcgggggagaaccgctcgatgcctttgagaaagttgcacatcgtgtgcca
atgttaagcttaggcaacgcttttaatgaagaagacttacgagattttgaccgtcgtgtc
cgtgagggattggcgactgagaatgtcacctacgtgtgtgaattgaaaatcgatggttta
gctatttctttgcgttatcaggatggactgtttgttcaaggagcaacgcgtggcgacggg
acgactggtgaagatattacgagtaacttaaagacgatcagaagtattccgctccgaatc
aaagatgcctcatcaattgaagtccgtggggaagcttatatgccacagcagtcttttctc
tctatgaacgaagcgcgtgaagcaaatcaggaagaaccatttgctaacccgcgaaatgct
gcggcaggatccttgcgtcaacttgacccgaagattgcagccaagcgtaacctcgatatt
tttctatatgcggtaggagaatgggaatctggttcattggaaacacatagtgaccgtctg
gaatacttacagcaattaggattcaagaccaatccggaatggcgaaaatgccaaggaatc
gatgaggtcatccaatatgttgaagcatgggtcgaaaaacgggccaatctttcgtatgac
attgacggtattgtgatcaaagtcaataacctcgaagcacaggaacaactcggcttcacc
gcgaaaagtccgcgttgggcaattgcgtataaattcccggctgaggaagctgtgacgaag
ctgatcgacattgaactcagtgtcggcagaacgggagtagtaacgccaaccgccattctt
gaacctgtgaaagtagcgggtactacggtacaacgtgcatcgcttcataatgaggattta
atccaggaaaaagacattcgtattggcgatacagtagtgattaaaaaagccggcgacatc
atcccggaagtagtacgagttgttgaagatatgcgtacggatgaacaaaaaccgtttacg
atgccggacatctgcccttcctgtggagatgaagtggtccgattggaagaagaagtcgca
ttgcgttgtataaatcctaactgtccggcacagctgcaggaaggcttgattcactttgta
tccagactggcaatgaatatagatggactaggggagaaagtgattgagcaattgtttcaa
gcatcctatatccacacaatagccgatctgtatcgtctggagcgcgatgaattgttaaag
ctggagagaatgggggagaaatccgttcaaaacctgctcaccgctatcgaacaatcaaaa
gagaattcactggaacgtttgttatttggactggggattcgttttgtcgggtcaaaagca
gccagaacattagctgagcattttgaaacgatggatcatctcgagaaggcaacctttgaa
gatttggtcgctgttgatgaaatcggggacaaaatggcagattcgattgtgacgtatttc
gcagatgaaaaagtaacacagcttatccgcgaattgaaggaactcggtttaaatatgtct
tataaaggggcaaaagcaagtgatgcaccttctgacagtgtcttttccggtaagacagta
gtactgactggaaaattagagatcttctccagacaagaagcgaaacagcgcattgaagcg
ttaggcggaaatgtgacaggtagtgtaagtaaaaaaacagatctgcttattgcaggggag
gatgccggttccaagatggataaggctaagaagttggaaattgaaatttgggatgaagcg
aaattgcaagaagtattaggggaggaagcatga
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integrated database retrieval system
