Gynuella sunshinyii: YC6258_04683
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Entry
YC6258_04683 CDS
T03690
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gsn
Gynuella sunshinyii
Pathway
gsn03030
DNA replication
gsn03410
Base excision repair
gsn03420
Nucleotide excision repair
gsn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YC6258_04683
03410 Base excision repair
YC6258_04683
03420 Nucleotide excision repair
YC6258_04683
03430 Mismatch repair
YC6258_04683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsn03032
]
YC6258_04683
03400 DNA repair and recombination proteins [BR:
gsn03400
]
YC6258_04683
Enzymes [BR:
gsn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YC6258_04683
DNA replication proteins [BR:
gsn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YC6258_04683
DNA repair and recombination proteins [BR:
gsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YC6258_04683
NER (nucleotide excision repair)
GGR (global genome repair) factors
YC6258_04683
MMR (mismatch excision repair)
DNA ligase
YC6258_04683
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YC6258_04683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Mce4_CUP1
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AJQ96715
UniProt:
A0A0C5VBJ7
LinkDB
All DBs
Position
complement(5031090..5033108)
Genome browser
AA seq
672 aa
AA seq
DB search
MNQADYQQLQQLRQMIERHNYEYYVLNESTVTDAEYDRLMQQLRKIESEHPEWVTPDSPS
QRVSGQPADGFETVVHEVPMLSLDNAFGEQDMHDFVRRIQDRLRQQDDFEFCCEPKLDGL
AISLLYENGVLVRAATRGDGTTGENITANAKAIRNIPLRLRGNGYPAILEVRGEVYMTRS
GFEAMNERFRSNEEKTYMNPRNAASGALRQLDSRITAQRPLEFCCYSVGRVEQGTVPDSQ
YALLKQLQQWGLKINSEMRQVTGVDGCLDYFQQMLNKRDGLDYDIDGVVFKIDDMALQKR
LGFVSRAPRWAIAHKFPAQEEQTRLLAVDYQVGRTGAITPVARLEPVFVGGVTVSNATLH
NLDEITRLGLAINDQVIIRRAGDVIPQIVKVAHQADDDERQVIEIPTACPVCGSDVLRVE
GEAALRCTAGLFCDAQRKEGLKHFVSRKAMDIEGLGDKLIDTLVDLKLVNHFSDLFRLTF
EQLVNLERMAEKSANNLLEALEHSKQTTLPRFLFSLGIREVGETTARNLANHFADLNELM
HASEEDLQGVDDVGPVAARNVAAFFAETHNRDEVQALLDLGIQWPVQQQDSTDAVLAGQT
WVVTGKLEALSRDEASERLLALGAKVAGSVSKKTTRVVAGPGAGSKLKKANELNIPVMDE
AEFMDYLKTLEN
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagccgactatcagcagcttcaacagctgcgtcaaatgattgagcgtcataac
tatgaatattatgtgctcaatgaatccaccgtgaccgatgccgaatatgatcgtctgatg
caacagcttcggaagattgagtctgagcaccccgagtgggtcacacctgattctccgtct
cagcgagtcagtggccagccggccgatggttttgaaacggtggtccatgaagtgccgatg
ttgtccctcgacaacgctttcggtgaacaggatatgcatgatttcgtgcgccggatacag
gatcgtctgcgtcagcaggatgattttgagttctgttgtgagcccaagcttgatggtttg
gccatcagtctgttgtatgaaaatggtgtgctggtgcgcgctgccacccggggtgatggc
accacgggagaaaacattaccgccaatgccaaagccattcgtaatatccctttgcgcctt
cggggaaatggttatccggctattttggaagtgcgcggtgaagtctacatgacccgttca
ggttttgaagccatgaatgagcggtttcgcagcaacgaagaaaaaacctatatgaacccc
cgtaatgctgcatcgggtgcgttgcgtcagctggattcccggattactgcgcaacggccg
ctggagttctgttgttattccgttggtcgggtcgaacagggaaccgtaccggacagccag
tacgcactgttgaaacagctgcagcaatggggactcaaaatcaattccgaaatgcgtcag
gtaacgggggtggatggttgcctggattattttcaacagatgctgaataagcgcgatgga
ctggattacgacatcgatggtgtcgtgttcaagatcgacgacatggctctgcaaaagcga
ttgggatttgtgtcccgggcaccacgctgggcgatcgcgcataaattcccggcacaggaa
gagcagacccgtcttctggcagtggactatcaggtaggcaggactggtgccatcactcca
gtagcgcggcttgagccggttttcgtggggggagtgaccgtcagcaatgccacgctccac
aatctcgacgaaatcacccgtcttggtttggccatcaatgatcaggtgattatccgccgg
gccggtgatgtgattccgcagattgtgaaagtggctcatcaggctgatgacgatgagcgc
caggtgatagagattccgacggcctgcccggtctgtggttcggacgtgttaagggtcgag
ggcgaagcggcactgcgttgtaccgccggtttgttctgtgatgcccagcgtaaagagggg
ctgaaacattttgtctcgcgcaaggccatggacattgaaggcctcggtgacaagttgatc
gatacgttggtggatcttaagctggttaaccacttctccgatctgttccggctgacgttt
gagcaactggtgaatcttgagcgtatggcggaaaagtcggctaacaatctgttggaagcc
cttgaacacagcaaacaaacaacattgccacggttcttgttttccctgggtattcgtgaa
gttggggaaacaaccgcccgtaatcttgccaaccattttgctgatctcaatgaactgatg
catgcctcggaagaagatctgcagggagtggacgatgtgggtcctgtagccgccagaaat
gtggcagcattcttcgcagaaacccacaatcgtgacgaagttcaggcgttgctggatctg
ggtattcagtggccagtacagcagcaggacagtactgatgctgtactggccggtcagacc
tgggtggttaccggtaaacttgaagccctgagccgggatgaagcttctgagcggttgctg
gctttgggtgccaaggtggctggcagtgtgtccaaaaaaaccacccgggtggttgccggt
ccgggtgccggatcaaagctgaaaaaagccaatgaactgaatattccggtcatggatgaa
gctgaatttatggattatttaaaaacgctggagaattga
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