Gimibacter soli: PH603_13700
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Entry
PH603_13700 CDS
T09793
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gso
Gimibacter soli
Pathway
gso03030
DNA replication
gso03410
Base excision repair
gso03420
Nucleotide excision repair
gso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PH603_13700 (ligA)
03410 Base excision repair
PH603_13700 (ligA)
03420 Nucleotide excision repair
PH603_13700 (ligA)
03430 Mismatch repair
PH603_13700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gso03032
]
PH603_13700 (ligA)
03400 DNA repair and recombination proteins [BR:
gso03400
]
PH603_13700 (ligA)
Enzymes [BR:
gso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PH603_13700 (ligA)
DNA replication proteins [BR:
gso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PH603_13700 (ligA)
DNA repair and recombination proteins [BR:
gso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PH603_13700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PH603_13700 (ligA)
MMR (mismatch excision repair)
DNA ligase
PH603_13700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PH603_13700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WCL53588
UniProt:
A0AAE9XMD8
LinkDB
All DBs
Position
complement(2968807..2971098)
Genome browser
AA seq
763 aa
AA seq
DB search
MPGLFDIPVEHLTRSEAKAELQRLADEIARHDALYHGEDDPEISDADYDALKRRNDAIEA
RFPEIRLADSPSLRVGVAPTSGRFEKVTHKRPMLSLENAFADEDVTEFVARVRRFLGLND
TIAVAMTAEPKIDGLSLALRYERGELVQAATRGDGTVGENVTANARTIKSIPQSLAGTDW
PDVLEVRGEVYMSKADFLALNTAQEVSGGKIFANPRNAAAGSLRQKDATITASRPLEFFA
YAWGEISTLTFNTQMEAVEAFKRWGFKVNPLMVRVEDAAGALAHYRKIGEARATLDYDID
GVVYKIDRLDWQARLGMVARAPRWAIAHKFPAEQAMTILKDIDIQVGRTGALTPVAKLEP
IGVGGVIVSNATLHNRDEIARLDVRIGDTVVIQRAGDVIPQVVKVVAEKRPAEARPFIFP
EHCPVCGSPALAEGEDVVVRCTGGLTCKAQRAERLKHFVSRNAFDIEGLGDKQVEAFLGR
GWLDSPADIFRLKSHKAELLMMDGFGDKSVENLMAAIEERRAVDFHRMIFALGIPSIGSE
TAKIFARHFETPAAMVDWLNRAEEFRQQMVAAIGEQEALDLIKAVMESSKLQGLQKILMI
EDAREASNALLLFTANKGYRFSEDVLLPTAAVAALEQHNRDLMALDGIGVDAVLSLEDFY
HDERNRKVVADLIAELSVKPVEAQATDSPVSGKTVVFTGSLEKMTRNEAKARAEALGAKV
SGSVSKKTDLVVAGPGAGSKLKDAEKHGVKVISEDEWLALVGA
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgcccggactattcgatatccccgtcgagcacctgaccagaagcgaagcgaaggcggaa
ctgcagcggctggccgatgaaatcgcccgtcacgacgcgctctatcacggcgaggatgat
cccgagatttcggacgccgactatgacgccctcaagcgccgcaacgacgccatcgaggcc
cgcttccccgagatccggctggcggacagcccgagcctgagggtgggcgtggcgcccacc
agcggcaggtttgaaaaagtgacgcacaagcggcccatgctgtcgctcgaaaacgcgttc
gcggacgaggatgtcaccgaatttgtcgcccgcgtgcggcgcttcctcggcctcaatgac
acgattgccgttgcgatgacggccgagccgaagatcgacggcttgtcgctggcgctgcgc
tatgagcgcggcgaactggtgcaggccgcaacccgcggcgatggcacggtgggcgagaat
gtcacggccaatgcccgtaccatcaaaagcattccgcaaagccttgccggcacggattgg
cccgatgtgcttgaagtgcggggcgaggtctatatgtccaaggccgactttctggcgctg
aatacggcgcaggaagtctcgggcggcaagatattcgccaacccgcgcaatgcggcggca
gggtcgcttcggcagaaggatgccacgatcacggcatcccgtccgctcgagtttttcgcc
tatgcctggggtgagatttcaacgctcaccttcaatacgcagatggaggccgtggaggcc
ttcaagcgctggggtttcaaggtcaatccgctgatggtgcgggtggaggatgcagctggc
gcgctggcgcattaccgcaagatcggcgaagcccgcgccacgctcgattatgatatcgac
ggggtggtttacaagatcgaccggctggattggcaggcccgtcttggcatggtcgcccgt
gcgccgcgctgggccatcgcccacaaattcccggccgagcaggcgatgacgatcctgaag
gatatcgatatccaggtggggcgcaccggggcgctgacgcctgttgccaagctggagccc
atcggcgtgggcggggtgattgtctcgaacgccacgctgcataaccgcgacgagattgcc
cggctggatgtacggatcggcgatacggtcgtcatccagcgcgccggcgatgtgatcccg
caagtggtgaaagtggtggccgagaagcgcccggctgaagccaggcccttcatcttcccc
gaacactgcccggtgtgtggcagtcccgcacttgccgaaggcgaggatgtggtggtgcgc
tgcaccggtggtctcacctgcaaggcccagcgcgccgagcgcctgaagcatttcgtcagc
cgcaatgccttcgatatcgaggggcttggcgacaagcaggtggaagccttcctcgggcgt
ggctggctcgatagccccgccgatatcttccgcctgaaatcgcacaaggccgagcttctg
atgatggacggcttcggcgacaaatcggttgaaaacctgatggccgcgatcgaggagcgc
cgcgccgtcgatttccaccgcatgatctttgccctcggcattccgtccatcggctcggaa
accgccaagattttcgcccggcactttgaaacgcctgccgcgatggtcgactggctgaac
agggccgaggaattccgccagcagatggtggctgcgattggcgagcaggaagcgctcgat
ctcatcaaggcggtcatggaatcgagcaagctgcaaggcctgcagaagatactgatgatc
gaggatgcgcgtgaagcctcgaacgcgcttctgctgtttaccgccaacaagggctatcgt
ttcagcgaagacgtgctgctcccgactgcagccgttgccgcactggaacagcacaaccgc
gacctgatggcgctggatggtatcggggttgatgcggttctgagccttgaagacttttac
catgacgaacgcaaccggaaggtcgtggctgacctgatcgccgagctttcggtgaagccg
gtggaggcacaggcaaccgacagtccggtttcgggcaaaacggtcgtctttaccggttcg
ctggagaaaatgacccgcaacgaagccaaggcccgcgccgaggcgcttggtgccaaggtt
tcgggctcggtttccaagaaaaccgacctcgtggtcgcggggccgggggcggggtcgaaa
ctcaaggacgccgaaaagcacggcgtgaaggtcatatcggaagacgaatggctggccctt
gtcggcgcttga
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