Gluconobacter sphaericus: IGS75_01030
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Entry
IGS75_01030 CDS
T07169
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gsp
Gluconobacter sphaericus
Pathway
gsp03030
DNA replication
gsp03410
Base excision repair
gsp03420
Nucleotide excision repair
gsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IGS75_01030 (ligA)
03410 Base excision repair
IGS75_01030 (ligA)
03420 Nucleotide excision repair
IGS75_01030 (ligA)
03430 Mismatch repair
IGS75_01030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gsp03032
]
IGS75_01030 (ligA)
03400 DNA repair and recombination proteins [BR:
gsp03400
]
IGS75_01030 (ligA)
Enzymes [BR:
gsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IGS75_01030 (ligA)
DNA replication proteins [BR:
gsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IGS75_01030 (ligA)
DNA repair and recombination proteins [BR:
gsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IGS75_01030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IGS75_01030 (ligA)
MMR (mismatch excision repair)
DNA ligase
IGS75_01030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IGS75_01030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RNA_ligase
Zn_ribbon_ISL3
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QQX91262
LinkDB
All DBs
Position
226852..228903
Genome browser
AA seq
683 aa
AA seq
DB search
MTTTPLSAAERHAALEADLARWDEAYHRRDEPEVSDAVYDAARREILELEEAYPDLRSQD
GASQRVGVAPDSAFGKYRHLVPMLSLDNVFDPEGFDGFVSRAGRFLGLDEDGLQSLQFVA
EPKIDGLSISLTYEHGRFVRGTTRGDGIEGEDVTANLLTLKDIPRELPGEAPERIEIRGE
VFLSKSSFLTLNEQQVARGAKPFANPRNAAAGSLRQLDAEITRSRPLSLFAYAQGYTSSP
VATTHWNYLEKLRSWGFTVNPLSQMIGHARDIPAYVEKLARERSGLDYDIDGIVFKLDDL
SLQDRLGFAGRAPRWAIAWKFPAEQAITRLQEIEIQVGRTGALTPVAHLEPVNVGGVIVS
RATLHNEDEIARKDVRVGDLVRLQRAGDVIPQILGPVPSNAPRSEPFVYPDHCPVCGSLA
ERVHGEAVRRCTGGLTCEAQIVERLIHMVSRNAFDIDGLGERSIREFYDAGYIRRPSDIF
RLRQHEEVLLQRDGWGRLSVDNLFRAIDDRRTIPLSRLIFGLGIRRIGERNAQLLSRHYQ
TFENWRTAMLATRPDSEERASLGAIMGVGDAIADELSAFFSESHNIETLDDLASELTDII
PEEAPSEGHLSGKVIVFTGTLTTMSRPEAKAIAERLGAQVTDSVSKKTSLVVLGEKAGSK
AKKAAELGIDTIDESGWRTLAGL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccacccctctttctgccgccgagcgtcacgctgcactcgaagcggacctcgcg
cggtgggacgaggcgtatcacagacgcgacgagccggaagtttccgatgccgtctatgat
gctgcacgtcgtgaaattctggagctggaagaagcatatccagatctccgctcccaagat
ggagccagccagcgcgttggcgtcgcacccgattccgctttcggcaaatatcgccatctt
gtccccatgctatcgctcgacaatgtcttcgatccggaaggcttcgatggctttgtttca
cgtgcaggccgctttctcggcctggacgaggacggccttcagtcgctccagtttgtggcc
gagcccaagattgacggcctctccatcagcctgacctacgagcacggacgtttcgtgcgc
gggacaacacgcggcgacggcatcgaaggtgaagacgtcacggccaacctgctgaccctg
aaagatattccacgcgaactgcccggcgaagcacctgaacggattgaaatccgtggcgaa
gtcttcctttcgaaaagcagcttcctgaccctcaacgaacagcaggtcgcacgcggagca
aagcctttcgccaatcctcgcaatgccgcagccggctcccttcgccagctggatgcggaa
atcactcgcagccgtccgctgtctctcttcgcctatgcgcaggggtacacgtcctcaccg
gttgcaacgacacactggaactatctggaaaaactgcggagctgggggttcacggtcaat
ccgctctcccagatgattggccatgcccgcgatattccggcttatgtcgagaagctggca
cgcgaacgctcggggctggactatgacatcgacggcatcgtcttcaaactggacgatctg
agccttcaggatcgtctcggctttgccggtcgcgctccccgctgggccattgcatggaag
tttccggcagagcaggccattacgcgcctgcaggaaatcgagatccaggtcggccgcaca
ggcgccctgaccccggttgcccatctggaacccgtgaatgtcggcggcgtcatcgtctcg
cgcgcaacactgcacaacgaagacgaaatcgcccgcaaggacgttcgcgtcggggatctg
gtccgcctgcagcgcgccggagacgtgatcccgcaaatcctcggccctgtccccagcaat
gccccccgttcagagcctttcgtctatcccgaccactgccccgtctgcggatcgctcgcc
gagcgcgtgcatggcgaggcggtccgccgctgcacaggcggcctgacctgcgaagcgcag
atcgtggagcgcctgatccacatggtatcacgcaacgcgttcgacatcgacggactgggc
gaacgcagcatccgtgaattctacgacgcgggctacatccgccgccccagcgacattttc
cgcctgcgccagcacgaagaggtcctactccagcgtgacggctggggacggctgtcggta
gacaacctcttccgtgccattgatgaccgccgcaccattcccctgtcccggctgattttc
gggcttggcatccggcggatcggggagcgcaacgcccagcttctgtcccggcattaccag
accttcgaaaactggcgcaccgctatgctggctacacggccggactccgaagaacgcgct
tccctgggcgccatcatgggcgtgggcgatgcgatcgccgatgaactctccgcctttttc
tccgaaagccacaatatcgagaccctcgatgacctggcctcggagctaacggacattatc
cccgaggaagctccgtcggaagggcatctctcaggaaaggtcattgtcttcaccggcacc
ctgaccacaatgagtcgcccggaagccaaagccatcgccgaacgtctgggcgcacaggtg
acggatagcgtgtcgaaaaagacctccctggtcgtgctgggcgaaaaggctggttccaag
gccaagaaagcagcagaactgggaatcgataccatcgatgaaagcggctggcgcacgctg
gcggggctgtaa
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