Bacillus sp. X1(2014): HW35_11770
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Entry
HW35_11770 CDS
T03242
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gst
Bacillus sp. X1(2014)
Pathway
gst03030
DNA replication
gst03410
Base excision repair
gst03420
Nucleotide excision repair
gst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HW35_11770 (ligA)
03410 Base excision repair
HW35_11770 (ligA)
03420 Nucleotide excision repair
HW35_11770 (ligA)
03430 Mismatch repair
HW35_11770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gst03032
]
HW35_11770 (ligA)
03400 DNA repair and recombination proteins [BR:
gst03400
]
HW35_11770 (ligA)
Enzymes [BR:
gst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HW35_11770 (ligA)
DNA replication proteins [BR:
gst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HW35_11770 (ligA)
DNA repair and recombination proteins [BR:
gst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HW35_11770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HW35_11770 (ligA)
MMR (mismatch excision repair)
DNA ligase
HW35_11770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HW35_11770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
HHH_3
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AIM16833
LinkDB
All DBs
Position
2248810..2250816
Genome browser
AA seq
668 aa
AA seq
DB search
MDLRNAEKRISELRNLLNQYGYEYYVLDKPSVPDAEYDRLMQELLALEEQFPELKTPDSP
SERVGGAVLDMFEKVEHRTPMLSLGNAFNEQDLRDFDRRIRQAVGNDFSYVCELKIDGLA
VSLRYEDGLFIQGATRGDGTIGEDITANLKTIKSIPLRLTEPVSIEVRGEAFMPKRSFEA
LNEARKERGEELFANPRNAAAGSLRQLDPKIAASRKLDIFLYGIGNVSEIGIESHSEGLD
YLDQLGFKTNKERKKCATIDDVIEYVNGWVEKRPHLPYEIDGIVIKVDSLAQQAALGTTA
KSPRWAIAYKFPAEEVITTLKDIELSVGRTGVVTPTAILEPVKVAGTTVQRASLHNEDLI
REKDIKIGDKVVIKKAGDIIPEVVNVLADQRTGEEKDFHMPTHCPECNSELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRDAMNIEGLGEKVISQLFANKLISNVADIYKLTREQLIGL
ERMGEKSVSNLLKAIEASKSNSLEKLLFGLGIRHVGAKAAKTLAQEFGNMEKLASASKEQ
LMAINEIGNKMADSIVSFFEQEEAKELLQELSAAGVNMEYKGAKPVSNQESDSIFSGKTI
VLTGKLEQLTRNEAKEKIEALGGKVTGSVSKKTDLVIAGTEAGSKLTKAQELGIEVWDEE
KLLEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacctgcgaaatgctgaaaagagaatcagtgaattacgaaatttattaaaccaatat
ggctatgaatattatgttttagataaaccgtccgttcctgatgcggaatatgatcgctta
atgcaggaacttttggcgcttgaagagcagtttcctgaactgaaaacaccggattcacct
tccgaaagggtgggcggtgctgtccttgacatgtttgaaaaagtagaacaccggacaccg
atgttaagcttgggaaatgcgtttaatgaacaagatcttagagattttgaccgccgtatc
cggcaagcagttggcaatgatttttcctatgtatgtgaactgaaaattgatggtcttgct
gtttcattgcggtatgaggacggattatttatacaaggagctacccgtggtgatgggact
attggagaagatattacggcaaatctaaaaacaattaagtcgattccactccgtttaaca
gaacctgtttcgattgaagttcggggtgaggcgtttatgcctaagcgttcctttgaagca
ttgaatgaggcacggaaggagcgtggagaggagctgtttgctaatccgcgtaatgcggca
gcaggatcacttcgtcagttggacccgaaaattgctgcttcaagaaagttggatatcttt
ttatacgggatcggcaatgtctcagaaatagggattgaatcccatagtgaaggacttgat
tacttagatcagttgggatttaaaacaaacaaggaacggaaaaagtgtgcaacgatcgat
gatgtcatcgagtacgttaatggctgggtagagaaacgtccacacctgccatatgaaatt
gatgggattgttattaaggtcgattctcttgctcagcaggcagcacttggaacaacagcc
aaaagcccacgctgggccatcgcttataaatttccggctgaagaagtaatcactacatta
aaggacattgaactaagtgtcggaagaacaggagtggttacgccaacagccattttagag
cctgtcaaagtagccggaactaccgttcagcgggcgtccttgcacaatgaagatttaatc
cgggaaaaagatattaaaatcggagataaagtagttattaaaaaagctggtgatattatt
ccggaagtggttaatgtactggctgaccagcgtacgggtgaagagaaggattttcacatg
ccgactcattgtccagaatgtaatagtgagctcgtccgtcttgaaggagaagtcgcctta
cgttgtattaatccgaaatgcccggcccaaattcgtgaaggattgattcattttgtctca
agagatgcaatgaatattgaaggtttgggagaaaaagtcatcagccagctttttgccaat
aaattaattagcaatgttgctgatatttataaactgacaagagaacagcttattggactt
gaacggatgggagaaaaatccgtttccaatttgttaaaggccattgaagcttcgaagagt
aattcactagaaaaactgctatttggccttggtatccgtcatgttggggcaaaagcggca
aaaaccttggcacaagaattcggcaacatggaaaagttggcttctgcttcaaaagaacag
ttaatggctattaatgagattggaaataaaatggcagattcgattgttagcttttttgaa
caagaagaagctaaggaacttttacaggagttatcagctgctggtgtaaatatggaatat
aaaggggcaaaacctgtttcgaatcaggaatccgattccattttttcaggaaaaacaatt
gtccttacaggaaaattagaacagttaacaagaaatgaagcgaaagaaaaaattgaagcc
cttggtggtaaggttacaggaagtgtcagcaaaaagaccgatcttgtcatagctggaaca
gaggcaggatcgaaactgacaaaggcacaagagctgggaatagaagtttgggacgaggag
aagcttcttgaagaattaaataagtag
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