Gavia stellata (red-throated loon): 104253298
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Entry
104253298 CDS
T08384
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gste
Gavia stellata (red-throated loon)
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gste03036
]
104253298 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
gste03400
]
104253298 (SMCHD1)
Chromosome and associated proteins [BR:
gste03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104253298 (SMCHD1)
DNA repair and recombination proteins [BR:
gste03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104253298 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_hinge
Big_1
Motif
Other DBs
NCBI-GeneID:
104253298
NCBI-ProteinID:
XP_009810877
LinkDB
All DBs
Position
Unknown
AA seq
1097 aa
AA seq
DB search
NFNLKVTLPGLKEDTQIFKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNI
TAQPKLIVQCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQILKARIEILSCKD
VPPVEKIIKLLPSSHVARLQVLSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDEGERE
IHITPAVAEKIKVNWTPKINREQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFT
VRPLPDEPKHIKCKLKGPNTLQMDEELQSEIDVMITDQYGNQVQTVTSACVNSLGVSGPG
LDKSNLKITWQESTLTMRVKGIRFKPCLLGSKELCFAWREFSDFLRVNLTAGSPAKLQFV
DWPELEKPVAVINGRELQKPLIVQLCDQWGNPSPEPNVKISLTKGNNLKIVPSNQQHKTD
ENGRANLGVISIHAPRGEHTLQLKASYNKTTLDCPVITLNVLPDPEKPVCLNVKYDKNAS
FPAGGTFPDFMVSVLSEDDKIIKNINPARISMKMWEAQSSGTRIPIDVTTFSCSKVKDDK
EDGFFYFRDKVVPERVGTYSIQFTFAMDKTNMLSSDQIIVEVVPNDPVRLLPDSLPATPT
VSNVRTLTSRTLVKDLYLHVTDEYNNHTGIDLVGRIIAKIKSPNEGDDIEIPQFQGKVST
IEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKTPLEPYRLSFMFYNDFKKQQ
QMATLTRERDQLSQSIGVYRNWFDTTNQLVTEMKCQVKEAETRETHLKNELKKHQIELPK
TNTLQYVDSLIKQKMLDQEGVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVI
SWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKIFF
RPIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLT
REGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQIDLLQQYRAAVVKLDN
VNKDLDLQLQSLNTPEMQKKKQELAKQEKSLKLIEQKLGMTPSDKVTESLLQPIMLDMSD
TPVPPKRMRRETVKKLY
NT seq
3293 nt
NT seq
+upstream
nt +downstream
nt
aactttaatctgaaggttactcttcctggtttgaaagaagacacacaaatctttaaaata
agattgcagcctggccctcctcgtcaattgaaagtaaaaccagattctgaaattctaaag
attgaaaatggtacagctttcccctttcaggttgaagtactggatgaatcaggaaatata
acagcccagccaaagttgatagttcagtgtaagtttttaggtgcttcaaaccttcctgtg
tattccgtggactgcagtaatgcaggaacaaacattttaactggtccagttatacatgta
cagaatataaagaaagaccagatactgaaagcaaggattgaaatacttagttgtaaagat
gtgccaccagtggaaaagattattaaacttcttcctagcagtcatgttgcaagactacag
gtcttaagtatggatggacaaaaagctattcaaattaaacatcaggatgaaattaattgg
gttgctggcgatgtcatgcacaaccttatatttcagatgtatgatgaaggagaaagggag
atacacataactccagctgtggcagaaaaaatcaaggttaactggacacctaaaattaac
agagaacagttgattcagggattattacctgatgtaaaagtaccaacatcagtaaaagat
gtacgttactgtctaattacttaccttgatgaccacgtgtctttggagagtgccttcaca
gtcagaccacttcctgatgaacccaaacacattaaatgtaaattaaaaggaccaaacaca
ctgcagatggatgaagaactacaaagtgaaattgatgtaatgattacagatcagtatgga
aatcaggttcagacagtgacatctgcgtgtgtaaattccctaggagtttctgggcccgga
cttgataaatcaaatttgaaaataacttggcaggaaagtactttaacaatgagagtcaaa
ggtattcggtttaaaccttgtttacttggaagcaaagaactgtgcttcgcttggcgtgaa
ttttctgactttctcagagtaaatttaactgcaggatcccctgctaaattgcagtttgtg
gattggcctgagttagaaaagcctgttgcagtgattaatggtagagagttgcagaagccc
cttattgttcagctgtgtgatcaatggggaaatccatctcctgaacctaatgtcaaaatc
agccttacaaagggtaacaacttaaagattgttccttcaaaccagcaacataaaacagat
gaaaatggtagggctaacctgggagttattagtattcatgcacctaggggagagcacact
ttacagcttaaagcctcctacaacaagaccacattagattgtcctgtaatcacattaaat
gtcctgcctgatcccgagaaacctgtctgcttgaatgttaaatatgacaaaaatgcttct
tttccagcaggaggtaccttccctgattttatggttagtgttctttctgaagatgacaag
attattaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagt
ggaactaggataccaattgatgttacaacatttagctgtagtaaagtgaaggatgataag
gaagatggcttcttttatttcagggataaagtggttccagagagagtgggcacttacagt
atccagtttacctttgcaatggataagacaaatatgctcagcagtgaccagattatagtt
gaagttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactccaaca
gtttccaatgttcgaactcttactagccgtacactggtcaaggatttatacctccatgta
acggatgaatacaacaaccacactggaattgatctagttggcagaataatagcaaaaatt
aagagccccaatgaaggtgatgatatagagatcccacagtttcaggggaaagtcagtaca
attgagtttccatttgacagaggatcagctgaaattaatctagtgctggctgaaaacagt
cctggaagagatagcactgaatatattcttgtatttgagccagatctgccagctttgaaa
acgcctttggaaccataccgtctgtcatttatgttttacaatgatttcaagaagcagcaa
cagatggcaacacttacaagggagagagaccaattatctcagtccataggtgtttacaga
aattggtttgatactactaatcagcttgtaactgaaatgaaatgtcaggttaaagaagct
gaaacaagagaaactcacctgaagaacgaactgaaaaaacaccaaattgaattaccaaag
acaaacacacttcagtatgtggattctcttataaaacaaaagatgttggatcaagaagga
gtaatgaaacagccaagaagaacttgtacactcccgaactatccaaaaggcaaccaggat
attttaggcaagattgcacatttagcacaaattgaggataacgaagcagcaaaagttatc
tcttggcatttggcaagtgacatggactgtgtagtcacactgactactgaagccgctcgt
tctatttttgatgaaactcaaggtcgacaacaagtgttaccccttgattctatttacaag
aagacactccctgattggaacaggcctttacctcacttaagaaatggaaaaatcttcttc
agacctattggaaatcctgtatttgccagagatctgttaacatttccagataatgtagag
cattgtcaaacagtgtttgggatgcttttgggtgacactatcattatagataacttggat
gctgccaaccattacagaaaagaggttgtaaaaattacacattgccctactttgctgact
agggaaggagacaggattcgcagcaatggaaaatttggaggccttcagaataaagctcct
ccaatggacaaactcagaggaatggtatttggagcacccatgccaaaactttactctact
ttctctggacagatagatcttcttcagcaataccgtgcagcagtggtgaaacttgataat
gtgaataaggaccttgatttacagttgcagtcacttaacactccagaaatgcaaaagaaa
aaacaggaacttgcaaaacaagagaaaagtctcaagctaatagaacaaaaattgggtatg
actccatcagataaagtcactgaatcgttacttcagcctataatgttagatatgtctgac
acccccgtccctcccaaaagaatgcgaagagaaacagtaaaaaaattgtatag
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