Gavia stellata (red-throated loon): 104254122
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Entry
104254122 CDS
T08384
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste04010
MAPK signaling pathway
gste04120
Ubiquitin mediated proteolysis
gste04140
Autophagy - animal
gste04144
Endocytosis
gste04620
Toll-like receptor signaling pathway
gste04621
NOD-like receptor signaling pathway
gste04622
RIG-I-like receptor signaling pathway
gste05132
Salmonella infection
gste05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104254122 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
104254122 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
104254122 (TRAF6)
04140 Autophagy - animal
104254122 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
104254122 (TRAF6)
04621 NOD-like receptor signaling pathway
104254122 (TRAF6)
04622 RIG-I-like receptor signaling pathway
104254122 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
104254122 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
104254122 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gste04131
]
104254122 (TRAF6)
04121 Ubiquitin system [BR:
gste04121
]
104254122 (TRAF6)
Enzymes [BR:
gste01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104254122 (TRAF6)
Membrane trafficking [BR:
gste04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
104254122 (TRAF6)
Ubiquitin system [BR:
gste04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
104254122 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
Sina_ZnF
zf-RING_5
SlyX
PspA_IM30
Med21
RING_XB3-XBAT31
TRAF3_RING
zf-RING_11
CENP-F_leu_zip
DUF4455
HAP1_N
UPF0242
U-box
Spc29
CEP104_ZnF
HMMR_N
DUF16
DUF1664
ATG16
PUMA_CC
ADIP
DM
Cortex-I_coil
Motif
Other DBs
NCBI-GeneID:
104254122
NCBI-ProteinID:
XP_009806096
UniProt:
A0A093F1N8
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MSLLYSDNSCGARDVESGCCAAMASACSAGAKEDSVSVSSGTGNPPSSFTEETQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLTVKCPNKGCGMKMELRHLEDHQMQCDFSTVECPQCQGAFQKNHLKEHMTQ
ECPRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTVLIREQMPNHYDNDCPTAPV
PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFINGLPFEPAL
FSHVSHAAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRNL
EGKITEMEAQQCNGIYIWKIKNFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL
PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL
AFQRPTIHRNPKGFGYVTFMHLQTLKQRTFIKDDTLLVRCEVLTRLDFNSLRREGFQARS
TDGAM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctatatagtgataacagttgtggagcccgagacgtggaaagcggctgctgt
gcagccatggccagtgcctgcagcgctggagcgaaagaagacagcgtaagcgtcagcagc
gggactggaaaccctcccagttctttcacagaggaaacgcaaggatacgatgtggagttt
gatccacccttggaaagtaaatatgaatgtcccatctgtttgatggctcttcgggaagca
gtgcagacaccatgtgggcaccgtttctgcaaaggctgcattgtcaaatcaataagagat
gcaggtcacaaatgtccagtagacaacgaaattctgctcgaaaatcaactttttcctgac
aacttcgctaaacgggaaatcctttcattaacagttaagtgtcccaacaagggctgtggc
atgaagatggagctgaggcatttagaggaccaccagatgcagtgtgatttttctactgtg
gaatgcccacagtgccaaggagccttccagaagaaccatctgaaagagcatatgacacag
gagtgtccgaggcgtcaagtctgttgtccaaactgtgccacatctatggcctatgaagat
aaagagcttcatgaccaaacctgcccactcgccaatgtattttgtgaatattgcaacaca
gtgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgccccagtg
ccatgtttttacagtgcctttgggtgtcctgaaaagatgcaaaggaatgaactggcacga
catatgcaggagttcactcaggttcacatgagaatgatggctcagagttttcaaaatatc
agtgttactgctacaaatcctgtacccttcatcaatggcctacccttcgagcctgccctc
ttctcgcacgtgtcacatgccgcatatgattgtaatccagaagttgaaaacttcaaagaa
actatacagcagttggaaggtcgtctggtaagacaagatcaccagatcagagaactcatt
gccaaaatggagactcagaacactcacatggcagaactcaaacgtactatccgaaatttg
gagggaaagattactgaaatggaggcacagcaatgtaatggtatttatatctggaagatt
aagaacttcagtggacttcagaaagcccaggaagaagagcgacctgttgtgatgcacagt
cctggcttctatactggcaagcctggctacaagctgtgtttgcgcctgcatatccaatta
ccaaatgctcagcgttgcgctaattttatatctctgtttgtccacactatgcaaggagaa
tatgacagccatctgccttggcctttccaaggcactatacgactttctattttggatcaa
tcagaaggccctgaaaggcagaatcacgaagaagtaatggaagccaagccagagttacta
gccttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg
cacctgcaaaccttgaaacaaagaaccttcataaaggatgatacccttctggtgcgctgt
gaagttctaacgcgtctggatttcaacagtctccgcagagaaggatttcaagctcgcagt
actgatggagccatgtag
DBGET
integrated database retrieval system
