Gavia stellata (red-throated loon): 104254666
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Entry
104254666 CDS
T08384
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104254666 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gste03400
]
104254666 (LIG4)
Enzymes [BR:
gste01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104254666 (LIG4)
DNA repair and recombination proteins [BR:
gste03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104254666 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
Tox-REase-9
ATG17_like
Motif
Other DBs
NCBI-GeneID:
104254666
NCBI-ProteinID:
XP_009806804
UniProt:
A0A093F062
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASAPASQPSKKTVASHVPFGDLCSTLERIQTCKTRPEKTKYFKDFLDSWRKFHDALHQK
EKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTPA
GSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLS
DVSITLFSAFKPMLAAIADVQQIEKQMNNQLFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGAFPLDGSLTPFIHNVFNSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMVE
DSDLQTCFCVFDVLMVNNQKLGHEVLSKRYEILSSIFTPVMGRIHVVHKKNARTRKEVID
ALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAIAETPPPNEKPAVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPPC
NILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMTS
DMLEDLRGKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSNVSKVS
NVFEDVEFCVMTGMGKYSKSELESRIAECGGSVVQNPGPETYCVIVGTENVRVKNIIASN
KYDVVRAEWLLQCCQTKMFVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTAHTDVAQLKE
VFSRMKDNQVMPLDMIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRSKIHRTPLSI
RALELRFYGAKVVSHLEEGVSHVVIGEDHSRVKEVKALRRTFGKKFKIVSELWVTESVEE
GVLKNESQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcacctgcttcgcagccttctaaaaaaacggtggcctctcacgtccctttt
ggagatctgtgttctactctggagcgaatacagacgtgtaaaactcgtccggagaaaacc
aagtatttcaaggatttcctggattcctggagaaaattccatgatgctcttcatcaaaaa
gagaaagatgtcacggattctttttatccagctatgcgacttattcttccacagttggaa
agagagaggatggcgtatggaattaaagaaactatgcttgcgaagctgtatattgaactg
cttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattaccgaacacctgct
ggctcacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaacctagg
agcccaaaacaaggcagactgacaatagaacaagtcaacgagcatttagatgcaatagct
aataataatgctgctaaaaacaagggcctgttaaagaaaagtcttcttcagttaattacc
caaagcacagcactggaacaaaaatggctcatccggatgattataaaggatctaaagctt
ggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattacacaac
gtcacaactgatttggaaaaagtttgcagacaactgcacgatccctctgtctcacttagt
gatgtttctatcacgttgttttctgcctttaaaccaatgcttgctgctattgctgatgtc
cagcaaattgagaaacaaatgaataaccagctattctacatcgaaactaagctggatggt
gaacgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaacgggttc
gactatactcagcagttcggtgctttcccccttgatggttcgttaacgccatttattcat
aatgtatttaacagcaatatacaaaattgcattcttgatggtgaaatgatggcttacaat
cctgagacgcaaacctttatgcaaaaaggaaacagatttgacataaaaagaatggtggag
gactctgatctgcagacatgcttctgtgtgtttgacgtattgatggttaataatcagaag
ttgggtcatgaagtactaagcaaaagatacgaaatcttaagtagcatatttaccccagta
atgggcaggatacatgttgtgcataaaaaaaatgccagaacgagaaaagaagtaattgat
gctttaaatgaagcaatagataacagagaggaagggattatggtgaaagaccccatgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtcagt
gggctgatggatgaactagaccttttaattgttggtggttactggggaaagggctcacgt
ggtggaatgatgtctcattttctgtgtgctattgcagagacgccccctccaaatgaaaaa
cctgctgttttccactctatttgtcgtgttggctctggctatactatgaaggaattgtat
gatttgggtttgaaactagctaagcactggaagccctaccataggaaggacccaccctgt
aacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgttata
gttcagatcaaggcagctgagattgttaacagtgacatgtacaaaactgactgtactttg
agattcccacgaattgagaagataagagaggacaaagaatggtatgagtgtatgacttca
gacatgttagaagacctcagaggcaaagcagaaggaaagctggcatctaagcaccttcat
atagatgagtatgatgagccacaagagaaaaaaaggaaaactgtatcgaaggtgaagaag
ataattggcatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtttca
aatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaagtct
gaactggaaagcagaatagccgaatgtggtggcagtgtggtacagaacccagggccagag
acttactgtgtcattgtaggaactgagaatgtcagagtgaaaaacatcattgcttccaac
aaatatgatgtggtgagggcagagtggctgcttcagtgttgtcaaactaaaatgttcgtg
ccttggcagccagccttcatgattcacatgtctcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagctacacagcacacacagatgttgcacagctgaaggaa
gtgttctcaagaatgaaggacaatcaggtgatgcctttggacatgattgcagagttagaa
gaacgttattcatggaacagttgtcagctcagcatatttagaggaaatactatttatgtg
gactgttacgctgttgttaatgagcccagatccaaaatccacagaacaccactatccatt
agagctttggagctccgtttttatggtgcgaaagtagtctctcaccttgaagagggtgtc
tcccatgttgttataggagaagatcattcccgggtaaaagaggtgaaagcactcaggaga
acgtttgggaaaaaatttaaaattgtatctgagctgtgggtaacagagtcagtggaggaa
ggggtcctgaagaatgaaagtcagtacttaatttaa
DBGET
integrated database retrieval system
