Gavia stellata (red-throated loon): 104256114
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Entry
104256114 CDS
T08384
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
gste
Gavia stellata (red-throated loon)
Pathway
gste03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104256114 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gste03041
]
104256114 (EFTUD2)
Spliceosome [BR:
gste03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104256114 (EFTUD2)
Complex C
U5 SnRNP specific factors
104256114 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
104256114
NCBI-ProteinID:
XP_009808735
UniProt:
A0A093FDU5
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDAELGRESKDLDELEDDDDDDDMGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacactgacctgtacgacgagtttgggaactacattgggccggagctagactcggac
gatgacgacgccgagttgggcagagagtccaaggatttggacgagctcgaggatgatgac
gatgatgacgatatgggggatcatgacgaggaccaccctgggatggaggtggtgctgcat
gaggataagaaatactatcccaccgccgaggaggtctatgggcctgaagtcgagacgata
gtacaagaagaagacacgcagcctctcactgagcctattattaaacctgtgaaaaccaaa
aaattctctttgatggaacagacgttaccggtcactgtctatgagatggatttcctggca
gatctgatggacaactcggagctaattcgaaatgtgacgctgtgtgggcaccttcaccac
ggcaagacttgttttgttgactgcctgatagaacagacacacccagaaatccggaagcgc
tatgaccaggacctttgctacactgatatattgttcacagagcaagagaggggagtaggg
atcaagagcacaccagtgactattgttctgccggacaccaaaggaaagtcttttctcttc
aacatcatcgacactccaggtcacgtcaatttttctgatgaggtgacagctggtcttcgt
atttcggatggcgttgtacttttcattgatgcggctgagggggtgatgctgaacactgag
aggctgatcaagcacgctgtgcaggaaaggctcgcagtgactgtgtgcatcaataagata
gaccgactgatcctggagctgaaattgcctccaacagatgcttattacaaactcagacat
atcgtagacgaagttaatggtctgatcagcatgtattccaccgatgagaacctcgttctg
tctccccttctggggaacgtgtgtttctccagttcacagtacagcatctgcttcacgctg
ggatcttttgcaaagatttatgcagacacatatggagacatcaattatcaagagtttgca
aagcggctttggggtgacatctacttcaacccaaaaacccgcaagttcactaaaaaggcc
ccaacgagcagttcccagcgcagttttgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacgaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaattgaaattgaacattcggcccctcctgcggcttgtctgc
aagaagttctttggggaattcacaggctttgtggacatgtgtgtgcagcatatcccatcc
ccgaaggtgggagccaagacgaaaattgagcatacctacactggtggcgtcgactctgat
ctaggggaggccatgagtgaatgtgaccctgatggtcccctgatgtgtcacacaacaaaa
atgtacagcacagacgacggcgttcagttccatgcctttggcagagtgctcagtggtacc
atccatgctgggcagccagtgaaggtccttggagaaaactatactctggaagacgaggag
gattctcagatctgcactgttggacgcctctggatctcggttgcgaggtaccacattgag
gtaaaccgggttcctgctggcaactgggtgctgatagaaggagtggaccagcccatagtg
aagactgcaaccgtcacagagcctcggggcaatgaggaggctcagatattccgtcctttg
aagttcaacaccacatctgtcatcaaaatagctgtagagccagtcaacccctcagagctc
cccaaaatgttagatggtctccgcaaagtcaacaagagttacccctcacttactactaag
gtggaagagtctggggagcacgtgatcctggggacaggggagctctacctggattgtgtt
atgcatgatctacggaagatgtattcagagattgatattaaggtcgccgatccagttgtg
acattctgcgagacagtggtggaaacgtcatccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcctcttgagaagggactcgcggaggacatt
gaaaatgaagtggtccagataacgtggaacagaaaaaagctgggtgaattcttccagacc
aaatacgactgggatttgctggctgcacgttccatctgggcctttgggccagacgccact
ggcccaaacatcctagtagacgatacgctgccctcagaggtggacaaatcgctgctgggc
tctgtgaaggacagcattgtgcagggatttcagtgggggaccagggaagggcctctctgt
gatgaattgatccgcaatgtgaagtttaagatcctggatgcagtgattgctcaggagccc
ttgcaccggggtggaggacagatcatcccaacggcccggagagtggtgtattctgctttc
ctgatggccacccctcgcttgatggagccgtactacttcgtggaggtgcaggctcctgct
gactgcgtgtctgcggtgtacacggtcctggccaggcggagaggccacgtgacgcaagat
gctccaatcccaggctcccctctctacactatcaaagccttcatcccagccattgattca
tttgggtttgagacagacttgaggacccacacacagggacaagccttctcgctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccgaccc
ctggagccccagccagccccacatctggccagagagttcatgatcaagaccaggcgtagg
aagggcctgagcgaggacgtgagcatcagcaaattcttcgacgaccccatgttgctggag
ctggccaagcaagacgttgttctcaattaccccatgtga
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