Gavia stellata (red-throated loon): 104260100
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Entry
104260100 CDS
T08384
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
gste
Gavia stellata (red-throated loon)
Brite
KEGG Orthology (KO) [BR:
gste00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gste04040
]
104260100 (SCN4A)
Ion channels [BR:
gste04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104260100 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
104260100
NCBI-ProteinID:
XP_009813993
LinkDB
All DBs
Position
Unknown
AA seq
1709 aa
AA seq
DB search
MFIMITILTNCVFMTLSNPPAWSKNVEYTFTGIYTFESLIKILSRGXXXXXXTFLRDPWN
WLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALVGLQLFMGNLRQKCVRWPPLNDTLLGDLGLDNDTLANATLYGNFTDGI
ASNFTSNFTSNSTFDFEAYINDEANFYFLEGALDALLCGNSSDAGKCPEGYQCMKAGRNP
NYGYTSYDTFSWAFLALFRLMTQDFWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLINLI
LAVVAMAYAEQNDATMLEEQQKEEEFQQLMEQLKKHQEEQEKMLQDRRSSSDSLPSSVAE
KERDSDLNSDQDKAKDCNGQVVPKVVLERSATVIDFNPANEPEKSDHNHLTVGNQDGPGL
EKRVGSTISVISNAVEELEEAHQKCPSWWYKFAHTFLVWNCCPLWVKLKEFVKLVVMDPF
VDLGITICIVLNTVFMAMEHYPMTEEFENVLTVGNLVFTGIFTAEMVLKLIALDPYEYFQ
QGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGA
LGNLTLVLAIIVFIFAVVGMQLFGKSYIECVCKISLDCTLPRWHMNDFFHSFLIVFRILC
GEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADSLAASDDDGEM
NNLQIAIGRITKGIDFVKTSVLMLLRRLWKGKKVAPEEEQEPSKRDNSVLNHVDTGQEPK
SEYLDGVTGKEHFFMDDLDHMNFINNPNLTVQVPIASEESDLYEETSTQSDTEDAKNPLS
SDNASSLCSTVDYKPPPPVEEEEAEEAEDSNEPEECFTEACVKRFPCLYVDITSDRGKVW
WNLRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQRRVIRTILEYADKVFSYVFV
IEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLTANWLGYSELGAIKSLRTLRALRPL
RALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYRCVNTTSGEL
FDISVVNNKSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSR
EVEEQPVYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQK
KYYNAMKKLGSKKPQKPIPRPSNKFQGMVFDFVTKQVFDITIMILICLNMVTMMVETDDQ
SELKTSVLYKINLVFIVIFTGECVLKMFALRYYYFTIGWNIFDFVVVILSILGIVLSDII
EKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYS
IFGMSNFAYVKKEAGIDDIFNFETFGNSIICLFQITTSAGWDGLLSPILNSGPPDCDPDL
ENPGSSVKGDCGNPSIGIFFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLCEDDF
EMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPLKIPKPNKIKLITMDLPMVAGDKIHCL
DILFALTKEVLGDSGEMDALKATMEEKFMAANPSKVSYEPITTTLKRKHEEVCATKIQRA
FRRYLLRRSVKQASYMYRHSKDEDALREDAPEKEGLIATKMHEMYGNSGTDVETAPAFGL
APVPSSETRDAPGEAKAWDKECVVKESLV
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgttcatcatgatcacgattttaaccaactgcgtgtttatgacgctgagcaacccccca
gcatggtccaagaacgtggaatacaccttcactgggatatacaccttcgagtccctcatc
aagatactgtcgagaggnnnnnnnnnnnnnnnnntcacattcctgcgtgacccgtggaat
tggctggacttcatggtcatctccatggcctacattaccgagtttgtggacctggggaac
atctctgctctcaggaccttccgcgtcctccgcgccttgaaaaccatcaccgtgatacca
gggctgaagacgatcgttggggctctgatccagtcggtgaagaagctctcagacgtcatg
atcctcactgtcttctgcctgagtgtgttcgccctagtcggtctccaactcttcatgggg
aacctccggcagaagtgcgtgcggtggccccccctcaacgataccctgctgggggacttg
gggctggacaacgacacgttggccaacgcaacgctctatggcaacttcacagacggcatc
gccagcaacttcaccagcaacttcaccagcaacagcacctttgatttcgaggcctacatc
aatgatgaagccaatttctactttctggagggagcgcttgacgccctgctctgcgggaac
agcagtgatgctgggaagtgccccgaggggtaccagtgcatgaaggcggggaggaacccg
aactatggctacaccagctacgacaccttcagctgggctttcctggcactcttccgcctc
atgacgcaggacttctgggagaacctcttccagctgacgctgcgtgcagcagggaaaacg
tacatgatcttctttgtggtggttatatttcttggttccttctacctcatcaacctcatc
ctcgcagtggtggccatggcttacgcagaacagaacgacgccacgatgctggaggagcag
cagaaggaggaggaatttcagcagctcatggagcagctgaagaagcatcaagaggagcaa
gagaaaatgttgcaggaccggcggtccagcagcgattccctgcccagcagcgtggctgag
aaggagcgcgactcggacctgaacagtgaccaggacaaggcaaaggactgcaacgggcaa
gtggtccccaaggtcgtgctggagcggtctgctacggtgattgatttcaacccagccaac
gagccggagaaatcggaccacaaccacctcaccgtgggcaaccaagatgggccaggcctt
gagaagagggtggggagcaccatcagtgtcatctccaacgctgtggaagagctggaggaa
gctcaccagaagtgcccatcctggtggtacaaatttgcccacacgttcctggtctggaac
tgctgtcctctgtgggtgaagctgaaggagtttgtcaagctggtggtgatggaccccttc
gtggacctgggcatcaccatctgcattgtgcttaacacagtcttcatggccatggagcat
taccccatgacagaggagttcgagaacgtgctgaccgtggggaacctggtctttacgggg
atcttcacggcggagatggtcctgaagctcattgctttggacccctacgagtatttccag
cagggctggaatatctttgacagcatcatcgttaccctgagcctggtggagctgggtctg
gccaacgtgcaagggctctccgtgctccgctccttccgcttgctgagggttttcaagctt
gccaagtcctggcccaccctcaacatgctcatcaagatcatcggtaactcggtgggcgcc
ctgggaaacctcacgctggtgctggccatcatcgtcttcatctttgccgtggtggggatg
cagctcttcgggaagagctacatagagtgtgtgtgcaagatctcccttgactgcacgctg
ccccgctggcacatgaatgacttcttccactccttcctcatcgtcttccgcatcctctgc
ggggagtggatcgagaccatgtgggactgcatggaggtggccggccagaccatgtgcctc
attgtcttcatgatggtcatggtcattgggaacctcgtggtgctgaacctgttcttagct
ttgctgctgagctccttcagcgccgatagcctggcggcgtctgacgacgatggggagatg
aacaatttgcagatcgctattggcaggatcaccaaggggatcgactttgtaaagacctct
gtcctcatgctgctccgcaggctgtggaaagggaagaaggtggccccggaggaagagcaa
gagcccagtaagagggacaactctgtgctaaaccatgtggacactggccaggagcccaag
tcggagtacctggatggagtcactggcaaagagcattttttcatggatgacctggaccac
atgaatttcattaacaaccccaacctgacggtgcaagtccccattgcctcagaggagtct
gacctctacgaggagacaagcacccagtccgacaccgaagatgccaagaatcccctctcc
agcgacaatgcgtcgtccctgtgcagcactgtggattacaagcccccgccgccggtggag
gaggaggaggcagaagaggctgaggacagcaacgagcccgaggagtgcttcaccgaggcc
tgcgtgaagaggtttccctgcctctatgtggacatcaccagtgacagagggaaggtatgg
tggaacctccggaaaacctgcttccgcatcgtggagcacgactggttcgagaccttcatc
gtcttcatgatcctcctcagcagtggggcgctggcttttgaggacatctacattgaacaa
cgaagggtgatacgtaccatcctggagtacgccgacaaggtcttctcctacgtcttcgtc
attgaaatgttgctcaagtgggtagcctatggcttcaaggtgtacttcaccaacgcatgg
tgctggctggatttcctcatcgttgatgtttccattatcagcctgacagcgaactggctg
ggatactccgagctgggagccatcaagtccctgcggacgctgagggctctgagaccactg
cgtgccctgtccagatttgaaggcatgagggtggtggtgaatgccttgctgggtgccatc
ccctctatcatgaatgtcctgctggtctgcctcatcttctggctgatattcagcattatg
ggggtgaacctctttgcggggaagtactaccgatgtgtcaacaccacctcaggggagctc
ttcgacatcagtgtggtgaacaacaagagcgactgcatggccctcctccacaccaatgag
gtcagatgggtcaacgtcaaggtcaactttgacaacgtgggcttgggatacctctccttg
ctgcaggtggcgaccttcaaaggctggatggacatcatgtacgccgccgtggactcacgc
gaggttgaagagcagccagtgtatgagatcaacctctacatgtacatctacttcgtcatc
ttcatcatctttggcgccttcttcaccctgaacctctttatcggcgtcatcatcgacaac
ttcaaccagcagaagaaaaaatttggaggcaaagacatcttcatgacagaagagcagaag
aaatactataatgccatgaagaagctcggttccaagaaaccccagaagcccattcccagg
ccatcgaacaagtttcaagggatggtgtttgactttgttaccaagcaagtgtttgacata
accatcatgatcctgatttgtcttaacatggtgaccatgatggtcgaaacagacgatcaa
agtgaactcaaaacatctgtcctctacaagatcaacctggtcttcattgtcatcttcact
ggagagtgtgtgctcaaaatgttcgccttgcgctactactacttcactatcggttggaac
atctttgactttgtggtggtcatcctctccatcttaggtattgtcctgtcggacatcata
gagaagtacttcgtatcacccaccctcttcagggtcatcaggctggcaaggattggccgt
gtcctccggctgatccgaggggcaaaaggcatccggactctcctgtttgctctgatgatg
tccctgcctgccctgttcaacatcggcctcctgcttttcctcgtcatgttcatctactcc
atctttgggatgtccaattttgcctatgtaaagaaggaggcggggatcgatgacatcttc
aactttgaaactttcgggaacagcatcatctgcctcttccagatcaccacgtcagctgga
tgggatggcctcctcagcccaatcctgaacagcggcccccccgactgcgaccccgacctg
gaaaaccctggcagttccgtaaaaggggactgtggcaatccatctatcggcatcttcttc
ttctgcagctacatcatcatttcctttctcatcgtggtgaacatgtacattgccatcatc
ctggagaacttcaacgtggccacggaggagagcagcgaacctctctgtgaagacgatttt
gaaatgttttatgaaacttgggagaagtttgacccggacgccacccagttcattgcgtac
agcaccttgtctgactttgtagacaccttgcaggagccgctcaaaattcccaagccgaac
aagatcaagctaatcaccatggatctaccaatggttgctggggacaaaattcactgtctg
gatatcctctttgccctgactaaggaagtgctgggagactcgggagagatggatgccttg
aaggccaccatggaggagaagttcatggctgcaaacccctccaaggtttcttatgaaccc
atcaccaccactctgaaaaggaaacatgaggaagtctgtgctacaaaaatccagagggct
ttccggaggtacctcctgaggcgctcggtgaagcaggcatcctacatgtacaggcacagt
aaggacgaggatgccctgagagaggacgcacccgagaaggaaggtctgatcgccactaaa
atgcatgagatgtacgggaacagtgggacagatgtggagacagcccctgcctttggtctt
gcacccgttcccagctcagagactcgagatgctcctggtgaagcaaaggcatgggataag
gaatgtgttgtgaaagagtcgctggtataa
DBGET
integrated database retrieval system
