Gordonia terrae: BCM27_16750
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Entry
BCM27_16750 CDS
T04440
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gta
Gordonia terrae
Pathway
gta03030
DNA replication
gta03410
Base excision repair
gta03420
Nucleotide excision repair
gta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BCM27_16750
03410 Base excision repair
BCM27_16750
03420 Nucleotide excision repair
BCM27_16750
03430 Mismatch repair
BCM27_16750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gta03032
]
BCM27_16750
03400 DNA repair and recombination proteins [BR:
gta03400
]
BCM27_16750
Enzymes [BR:
gta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BCM27_16750
DNA replication proteins [BR:
gta03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BCM27_16750
DNA repair and recombination proteins [BR:
gta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BCM27_16750
NER (nucleotide excision repair)
GGR (global genome repair) factors
BCM27_16750
MMR (mismatch excision repair)
DNA ligase
BCM27_16750
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BCM27_16750
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ANY24223
LinkDB
All DBs
Position
complement(3731130..3733220)
Genome browser
AA seq
696 aa
AA seq
DB search
MADTTESGQPVTEQSGPEGDLREEWTALAEEIREHQFRYYVKDAPVITDGEFDLLLRRLQ
ALEEAHPELAIADSPTKLVGGGFSTAFSPADHLERMMSLDNVFDHDEMRTWVDRVVADAG
TRVDFLCELKIDGVALALVYRNGVLERGVTRGDGRTGEDVSLNARTIDDIPMRLAESAEY
PIPEVLEVRGEVFFRVEDFEALNASLVAEGKAPFANPRNSAAGSLRQKNPQITARRRLRM
ICHGIGHTEGWRPESLHDAYLALGAWGLPVSTHTTKVSGADEILDKITYWGEHRHDVEHE
IDGIVVKADDVTVQRRLGSTSRAPRWAIAYKYPPEEATTKLSDIQVNVGRTGRVTPFAVL
EPVLVAGSTVSRATLHNGSEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDLRDGSEVEFE
MPEKCPACGTPLRPEKESDADLRCPNQESCPAQLRERLFHLAGRGSFDIEALGYEAASAL
LSAGVLTNEGDLFSLTADDLVRTDLFTTKAGALSANGKRLLANLDKAKDVALWRVLVGLS
IRHVGPTAARALATEFGSLEAIEAADIERLAAVEGLGMTLAQSIHDWFTVDWHRDIVEKW
RAAGVSMEDERDESIVRTLEGKTIVVTGSLVDFSRDGAKEAILQRGGKASGSVSKKTDYV
VVGDSPGTKADKAEQLGVPVLDEDAFKRLLETGEAE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtggcagatacaacggagtcgggtcagccggtcaccgagcagtcggggccggagggagac
cttcgcgaggagtggacggctctcgccgaggagatccgcgagcaccagttccgctactac
gtgaaggacgcgccggtcatcaccgacggcgagttcgatctcctccttcggcgtctgcag
gcactcgaggaagcgcatccggaactcgcgatcgcggactcacccaccaagctcgtcggt
ggtggattctccacggcattctccccggcggaccatctcgagcgaatgatgtcgctggac
aacgtcttcgaccacgacgagatgcgcacctgggtcgaccgcgtggtcgccgacgccggc
acccgggtggacttcctctgcgaactcaagatcgacggggtggccctcgcgctggtgtac
cggaacggggtcctggaacggggcgtcacccgcggcgacggccgcaccggtgaggacgtg
tcgctgaacgcacgcacgatcgacgacatcccgatgcgcctggccgagtccgcggagtac
ccgattcccgaggtcctcgaggtgcgcggcgaggtcttcttccgggtggaggacttcgag
gcgctgaacgcctccctcgtggcggagggcaaggcgcccttcgcgaacccgcgcaactcg
gccgccggctcgctgcgccagaagaacccgcagatcaccgcccgccgcaggctgcggatg
atctgccacggcatcgggcataccgagggctggcggccggagtccctgcacgatgcctac
ctggcgctcggcgcctggggtctaccggtgtcgacgcacaccaccaaggtgtccggtgcc
gacgagatcctcgacaagatcacctactggggcgaacaccgtcacgacgtcgagcacgag
atcgacggcatcgtggtcaaagccgacgacgtcaccgtgcaacgacgcctcgggtccaca
tcgcgtgcgccgcggtgggccattgcctacaagtacccgcccgaggaagccaccaccaag
ctctccgacatccaggtcaacgtcggacggaccggccgcgtcacccccttcgcggtcctc
gagccggtcctcgtcgccggttcgacggtgtcccgtgcgaccttgcacaacggatcggag
gtcaagcgcaagggcgtgctgatcggcgacaccgtgaccatccgcaaggcgggcgacgtg
attcccgaggtcctcggacccgtcgtcgacctccgtgacggcagcgaagtcgagttcgag
atgccggagaaatgcccggcatgcggcacaccgctgcggccggagaaggagagcgacgcc
gaccttcgctgcccgaatcaggagagttgcccggctcagttgcgcgagcggctctttcat
ctcgccggccgcggttccttcgacatcgaggcgctcggctacgaggctgcgtcggccctg
ctgtcggcgggggtcctcaccaacgagggcgacctgttctcgctgaccgccgacgatctg
gtccgcaccgacctgttcaccaccaaggcgggtgcgctgtcggccaacggcaagagactg
ctggcgaacctcgacaaggccaaggacgtggcgctgtggcgcgtgctggtcgggctgtcc
atccgccacgtcgggcccaccgccgcccgcgccctggccaccgagttcggttcgctcgag
gcgatcgaggccgccgacatcgaacgactcgccgcggtcgaagggctggggatgaccctg
gcccagtccatccatgactggttcaccgtcgactggcaccgggacatcgtcgagaagtgg
cgggctgcaggcgtttccatggaggacgaacgggatgagtcgatcgtccgaacgctggag
ggcaagacgatcgtggtgacgggctcgctggtggacttctcccgtgacggggccaaggag
gcgatcctgcagcgcggtggcaaggcgtcgggttcggtgtcgaagaagaccgactacgtg
gtggtgggggattcgccggggaccaaggccgacaaggccgaacagctcggcgtgccggtg
ctcgacgaggacgccttcaagcggctgttggagaccggcgaagcggagtga
DBGET
integrated database retrieval system
