Geobacillus thermoleovorans CCB_US3_UF5: GTCCBUS3UF5_3630
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Entry
GTCCBUS3UF5_3630 CDS
T01676
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gte
Geobacillus thermoleovorans CCB_US3_UF5
Pathway
gte03030
DNA replication
gte03410
Base excision repair
gte03420
Nucleotide excision repair
gte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GTCCBUS3UF5_3630
03410 Base excision repair
GTCCBUS3UF5_3630
03420 Nucleotide excision repair
GTCCBUS3UF5_3630
03430 Mismatch repair
GTCCBUS3UF5_3630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gte03032
]
GTCCBUS3UF5_3630
03400 DNA repair and recombination proteins [BR:
gte03400
]
GTCCBUS3UF5_3630
Enzymes [BR:
gte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GTCCBUS3UF5_3630
DNA replication proteins [BR:
gte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GTCCBUS3UF5_3630
DNA repair and recombination proteins [BR:
gte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GTCCBUS3UF5_3630
NER (nucleotide excision repair)
GGR (global genome repair) factors
GTCCBUS3UF5_3630
MMR (mismatch excision repair)
DNA ligase
GTCCBUS3UF5_3630
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GTCCBUS3UF5_3630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
HHH_3
BRCT_2
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AEV17689
UniProt:
A0ABM5MDW9
LinkDB
All DBs
Position
340904..342916
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSP
TQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVRQEVGEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVSLEARGEAFMPKASFLRL
NEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDY
LQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAK
SPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALR
CLNPKCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGLE
RMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEEL
MAVPEIGEKMADSIIAFFSQPEAAELLHELRLYGVNMAYKGLKRAAEAPADSAFAGKTVV
LTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESR
FLQEISRGKR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccgccaacaagccgaacggcgcgcggccgagctgcgcgaactgctgcaccgctat
ggctacgaatattatgtgctcgaccggccgtccgtcccggacgccgagtatgaccggctc
atgcaagagttgatggccatcgaggaacagtatccggaattgaaaacgagcgactcgccg
acccagcgcatcggcggccctccgcttgaggcgtttcgcaaagtgacgcatgttgttccc
atgatgagtctcgcgaacgcgtttgacgaaggggatttgcgcgattttgaccgccgcgtc
cgccaagaggtcggcgaagcagcgtacgtgtgcgagttgaaaatcgatggtctcgctgtc
tccgtccgctatgaagatggttatttcgtccaaggggcgacgcgcggcgacggaacgacc
ggcgaggacattacggaaaatttgagaacgatccgttcactgccgcttcggctgaaggag
ccggtgtcgctggaggcgcgcggcgaggcgttcatgccgaaagcgtcgtttttgcgcttg
aatgaggagcgaaaagcccgaggcgaggagctgtttgccaacccgcgcaacgctgcggct
ggctcgctccgccagctcgatccgaaagtggcggcgtcgcgccagctcgatttgttcgtt
tatggtttggccaatgctgaagagcttggcattgagtcgcacagcgaggcgctcgactac
ttacaggcgcttgggtttaaagtgaatcccgagcggcggcgctgcgccaacatcgatgag
gtgatcgccttcgtcaacgagtggcacgaaaaacggccgcagctgccgtacgagatcgac
ggcatcgtcattaaagtcgactcgttcgcccaacagcgggagcttggtgcgacggcaaaa
agcccgcgctgggcgatcgcctacaaattcccagccgaggaagtggtgacgacgctcatc
ggcattgaggtgaacgtcggccgcacgggcgtcgtcactccgacagcgatcttagagccg
gtccgcgtcgccggcacgaccgtgcagcgcgccactcttcataatgaagattttatacgg
gaaaaagacattcgcatcggcgatgcggtcatcattaaaaaagcgggcgacatcatcccg
gaagtggtcggcgtcgtcgtcgaccggcgcgacggggatgaaacgccgtttgtgatgccg
acgcattgtccggaatgcgaaagcgagctcgtccgcctagatggagaagtggcgctccgt
tgcttaaacccgaaatgcccggcccagctgcgcgaacggctcatccattttgcctcaaga
gcagcgatgaacattgaagggttgggcgaaaaagtcgtcacccaactgtttaacgctggc
ctcgtccacgatgtcgccgatttgtaccggctgacgaaagaacagctcatcggtttggaa
cggatgggcgaaaagtcagcaaccaacttgcttgcagcgattgaggcatcgaagcaaaac
tcgctcgagcggttgctgttcggtcttggcatccgctacgtcggagcgaaagccgcccaa
cttttggctgagcattttgaaacgatggagcggctggaaaaagcgacgaaagaggaattg
atggccgtgccggaaattggcgagaaaatggcggactcgatcatcgccttcttttcccag
ccagaagcggccgagctgctccatgagctgcggctttacggcgtcaacatggcatacaaa
gggctgaagcgggcggctgaagcgcctgctgactccgccttcgccggcaaaacggtcgtc
ttgaccggcaaactcgcgtcgatgtcgcgcaatgaggcaaaagaagagattgaacggctc
ggcgggcgcgtcaccggcagcgtcagccgcagcaccgacatcgtcatcgccggtgaggac
gccggatcgaagctggagaaagcccagcagcttggcattgagatttgggacgaatcacga
tttttgcaagagatcagcagggggaaacgatga
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integrated database retrieval system
