Geobacillus thermocatenulatus: GT3921_18060
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Entry
GT3921_18060 CDS
T05178
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gtm
Geobacillus thermocatenulatus
Pathway
gtm03030
DNA replication
gtm03410
Base excision repair
gtm03420
Nucleotide excision repair
gtm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GT3921_18060 (ligA)
03410 Base excision repair
GT3921_18060 (ligA)
03420 Nucleotide excision repair
GT3921_18060 (ligA)
03430 Mismatch repair
GT3921_18060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gtm03032
]
GT3921_18060 (ligA)
03400 DNA repair and recombination proteins [BR:
gtm03400
]
GT3921_18060 (ligA)
Enzymes [BR:
gtm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GT3921_18060 (ligA)
DNA replication proteins [BR:
gtm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GT3921_18060 (ligA)
DNA repair and recombination proteins [BR:
gtm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GT3921_18060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GT3921_18060 (ligA)
MMR (mismatch excision repair)
DNA ligase
GT3921_18060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GT3921_18060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_3
HHH_8
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AST00733
UniProt:
A0A226Q541
LinkDB
All DBs
Position
complement(3683408..3685420)
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSP
TQRIGGPPLEAFRKVTHRVPMMSLANAFGEGDLRDFDRRVRQEVGEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVSLEARGEAFMPKASFLRL
NEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIASHSEALDY
LQELGFKVNPERRRCANIDEVIAFISEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAK
SPRWAIACKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVIIKKAGDIIPEVVGVVADRRDGDETPFVMPTHCPECESELVRLDGEVALR
CLNPNCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGLE
RMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEEL
VAVPEIGEKMADSIIAFFSQPEAAELLQELRLYGVNMAYKGPKRVAEAPADSAFAGKTVV
LTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESQ
FLQEINRGKR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatcgccaacaagccgaacggcgcgcggccgagctgcgcgaactgttgaaccgctac
gggtacgaatattatgtgcttgaccgcccgtctgttccggatgccgagtatgaccggctt
atgcaagagctcatcgccattgaggaacagtatccggagctcaaaacgagcgattcgccg
actcagcgcatcggcggcccgccgcttgaggcgtttcgcaaagtgacgcatcgcgttccg
atgatgagtctcgcgaacgcgtttggcgaaggcgacttgcgcgattttgaccgccgcgtc
cgccaggaagtcggcgaagcggcgtacgtatgcgagttgaaaatcgacggcctcgccgtc
tcggtccgctatgaagacggctatttcgtgcaaggagcgacgcgcggcgacggaacgacg
ggcgaggacattacagaaaatttgaaaacgatccgctcgctgcctctccgtctgaaagaa
ccggtgtcgctggaggcgcgaggcgaagcgtttatgccgaaagcgtcgtttttgcgcttg
aatgaggagcgaaaagcccgcggcgaggagctgtttgccaacccgcgcaacgcggcggct
ggctcgctccgccagctcgacccgaaagtggcggcgtcgcgccagctcgatttgttcgtt
tatggtttggccaatgccgaagagcttggcatcgcgtcgcacagcgaggcgctcgactac
ctacaggagcttgggtttaaagtgaatcccgagcggcggcgctgcgccaatatcgatgag
gtgatcgcctttatcagtgagtggcacgaaaaacggccgcagctgccgtatgagatcgac
ggcatcgtcatcaaggttgattcgttcgcccaacagcgggaacttggcgcaacggcgaaa
agcccgcgctgggcgattgcctgcaagttcccagccgaggaagtggtgacgacgctcatc
ggcattgaggtgaacgtcggacgcacgggtgtcgtgacgccgaccgcgatcctagagccg
gtccgcgtcgctggcacgaccgtgcagcgcgccactcttcacaatgaagattttatacgg
gaaaaagacattcgcatcggcgatgcggtcatcattaaaaaagcgggcgacatcatcccg
gaagtggtcggcgtcgtcgccgaccggcgcgacggggatgaaacgccgtttgtcatgccg
acgcattgtccggaatgcgaaagcgaactcgtccgcttggacggagaagtggcgctccgt
tgcttaaacccgaactgcccggcccagctgcgtgaacggctcattcatttcgcctcaagg
gcggcgatgaacattgaagggttgggcgaaaaagtcgtcacccaactgtttaacgccggc
cttgtccacgatgtcgccgatttatatcggctgacgaaagaacagctcatcggtttggaa
cggatgggcgaaaagtcggccgccaacctgcttgcggccattgaagcgtcgaagcaaaac
tcgctcgagcggttgttgttcggtcttggcatccgctacgtcggagcgaaggcggctcaa
ctgctcgccgaacattttgaaacgatggagcggctcgaacgggcgacgaaagaggagttg
gtggccgtgccggaaattggcgagaaaatggcggactcgatcatcgctttcttttcccag
ccagaagcggccgagctgcttcaggagctgcggctttatggcgtcaacatggcatacaaa
gggccgaagcgggtggctgaagcgcctgctgactccgccttcgccggcaaaacggtcgtc
ttgaccggcaaactcgcgtcgatgtcgcgcaatgaggcaaaagaagagattgaacggctc
ggagggcgcgtcaccggcagcgtcagccgcagcaccgacatcgtcatcgccggtgaggac
gccggatcgaagctggagaaagcccagcagcttggcattgagatttgggacgaatcacaa
tttttgcaagagatcaacagggggaaacgatga
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integrated database retrieval system
