Geobacillus thermodenitrificans: GTNG_0256
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Entry
GTNG_0256 CDS
T00496
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gtn
Geobacillus thermodenitrificans
Pathway
gtn03030
DNA replication
gtn03410
Base excision repair
gtn03420
Nucleotide excision repair
gtn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gtn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GTNG_0256
03410 Base excision repair
GTNG_0256
03420 Nucleotide excision repair
GTNG_0256
03430 Mismatch repair
GTNG_0256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gtn03032
]
GTNG_0256
03400 DNA repair and recombination proteins [BR:
gtn03400
]
GTNG_0256
Enzymes [BR:
gtn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GTNG_0256
DNA replication proteins [BR:
gtn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GTNG_0256
DNA repair and recombination proteins [BR:
gtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GTNG_0256
NER (nucleotide excision repair)
GGR (global genome repair) factors
GTNG_0256
MMR (mismatch excision repair)
DNA ligase
GTNG_0256
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GTNG_0256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ABO65640
UniProt:
A4IJY6
LinkDB
All DBs
Position
286088..288100
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAKRRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSP
TQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVRQEVGEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLNEPVSLEARGEAFMPKASFLRL
NEERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSAALSY
LQSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFAQQRQLGATAK
SPRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTMPTHCPECESELVRLDGEVALR
CLNPKCPAQLRERLIHFASRSAMNIEGLGEKVVTQLFNAGLVHDVADLYQLTKEQLVGLE
RMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATKDEL
MAVPEIGEKMADSITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTVV
LTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDETR
FLQEISREEQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccgccaacaagccaaacggcgcgcggccgagctgcgcgagctgttaaaccgctac
gggtatgaatattatgtgctcgaccggccgtccgtcccggatgcggagtatgaccggctt
atgcaagagctcatcgctattgaaaaacagtatccggagctaaaaacgagcgattcgccg
actcagcgaatcggcggcccgccgcttgaggcgtttcgcaaggtgacgcatcgcgtcccg
atgatgagcttagcaaacgcgtttaacgaaggcgatttgcgtgattttgaccgccgcgtt
cgtcaagaagtgggagaggcggcgtatgtgtgtgaattgaaaatcgacggtcttgccgtc
tcagttcgttatgaagacggctatttcgtccaaggagcgacgcgtggcgacggaacgaca
ggggaggacattacagaaaatttgaagacgatccgctcgctgccgctgcgcctcaacgag
ccggtgtcgctggaggcgcgcggcgaggcgttcatgccgaaagcgtcatttttacgcttg
aatgaagagcgccaagcgcgtggtgaagaactgtttgccaatccgcgcaacgccgcggcc
ggttcgctccgccagctcgatccgaaagtggcagcttcgcgccagctcgatctgtttgtc
tacggcttagccaatgctgaggagctgggcattgagtcacatagcgcggcgctcagctat
ttgcagtcgctcgggttcaaagtgaacccggagcgacggcgctgtgccacgattgatgaa
gtgatcgcatttgtcaacgagtggaaagagaagcggccgcaactgccgtatgagatcgac
ggcatcgtcattaaagtcgattcgtttgcccaacagcggcagctcggggcgacagcgaaa
agcccacgttgggcgatcgcctacaaattcccagccgaagaagtggtcaccacgctcatc
ggcatcgaggtgaatgtgggtcgcaccggcgctgtcactccgacggcaatcttagagccg
gttcgtgtcgccggcacgaccgtgcagcgcgccactcttcataacgaagattttattcgt
gagaaagatattcgcatcggcgatgccgtcattattaaaaaggcgggcgatatcatcccg
gaagtcgtcggtgtcgtcgtcgatcggcgcgacggggacgaagtgccgtttacaatgccg
acgcattgtccggaatgtgaaagcgaactcgttcgtcttgacggggaagtggcgctccgt
tgcttaaacccgaaatgcccggctcagctgcgtgaacggctcattcactttgcgtcaagg
tcggcaatgaacatagaagggttaggagaaaaagttgttacccaactgtttaacgctggc
cttgtccatgatgtcgccgatttgtaccagttgacgaaagaacagcttgtcgggctagaa
cggatgggtgaaaagtcggcagcgaatttgcttgcagcgattgaagcgtcaaagcaaaac
tcgcttgagcggctgttattcggccttggtatccgttatgtcggggcgaaggcggcccag
ctgttggccgaacatttcgaaacgatggagcgtctcgaggcagcgacaaaagacgaattg
atggccgtgccggagatcggggaaaaaatggccgactcgattaccacttatttttcccag
ccggaagcggttgagttgttgaatgagctgcgcacctatggtgtcaatatggcatacaaa
ggacggaaacggacggctgaaacgccagcctcatcggtgctggccggcaaaacggtcgtc
ctgaccggcaaacttgcgtcgatgtcacgaaatgaagcgaaagaacaaatcgagcggctc
ggcggtcgtgtcaccggcagcgtcagccgcagcaccgacatcgtcatcgccggtgaagat
gccggttcaaagctcgataaagctcagcagcttggcattgagatttgggatgaaacacga
tttttgcaagagataagcagggaggaacaatga
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integrated database retrieval system
