KEGG   Guillardia theta: GUITHDRAFT_70214
Entry
GUITHDRAFT_70214  CDS       T02925                                 
Name
(RefSeq) hypothetical protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
gtt  Guillardia theta
Pathway
gtt03018  RNA degradation
gtt03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gtt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GUITHDRAFT_70214
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GUITHDRAFT_70214
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gtt03019]
    GUITHDRAFT_70214
   03041 Spliceosome [BR:gtt03041]
    GUITHDRAFT_70214
Messenger RNA biogenesis [BR:gtt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GUITHDRAFT_70214
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GUITHDRAFT_70214
Spliceosome [BR:gtt03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GUITHDRAFT_70214
 Complex C
  U2 snRNP components
    GUITHDRAFT_70214
SSDB
Motif
Pfam: LSM DUF4941 Zn-C2H2_12
Other DBs
NCBI-GeneID: 17303474
NCBI-ProteinID: XP_005833951
JGI: Guith1_70214
UniProt: L1JEQ4
LinkDB
Position
Unknown
AA seq 97 aa
MAGKGGTNVDEPLDLLRLSLDERIYVKMRGDRELRGKLHAYDQHLNMVLGEVEEVVTVVE
YDEDTFEEHVKMTKRNIDMLYVRGDGVILVSPPLRTS
NT seq 294 nt   +upstreamnt  +downstreamnt
atggcggggaaaggagggacgaacgtggacgagccgctggatctgctgagactgtcgctg
gacgagaggatctatgtgaagatgagaggagacagagagctcaggggaaagttgcatgct
tatgatcagcatttgaacatggttttgggggaagtcgaagaagttgtaactgtagtagaa
tatgacgaagatactttcgaagagcacgtcaagatgactaagaggaacatcgacatgttg
tatgtaagaggagatggagtcatcctagtttcgccccctttgagaaccagttag

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