KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0761
Entry
HMPREF0424_0761   CDS       T01146                                 
Symbol
casB
Name
(GenBank) CRISPR system CASCADE complex protein CasB
  KO
K19046  CRISPR system Cascade subunit CasB
Organism
gva  Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:gva00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gva02048]
    HMPREF0424_0761 (casB)
Prokaryotic defense system [BR:gva02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-E factors
    HMPREF0424_0761 (casB)
SSDB
Motif
Pfam: CRISPR_Cse2 KH_NucS_shadow Por_Secre_tail
Other DBs
NCBI-ProteinID: ADB14225
LinkDB
Position
864626..865240
AA seq 204 aa
MAENQNKSVEVSNAVRKIINQFIEIADTSSYRAMLAQLRHTIGKPLSQSVEIWPWILNNV
PESFMDKYGEVSYQLRAVINTLQIYALYEQGVAEKSSYKDLNKSEDSVNEKSYNNMGTAL
RTLRSDEGVRGAMDRRFSVMITASDYESFYYYLRQLVRLLKSRTKENQQTIDYSKLARDL
YLLQFEDSEKVRLSWAQEYYRFTK
NT seq 615 nt   +upstreamnt  +downstreamnt
atggctgaaaatcaaaacaaatctgttgaagtatctaatgctgttagaaaaattatcaat
cagtttatagaaattgcagatacttcgtcatatagagctatgcttgctcaactgcgtcac
acaattggtaagccattaagtcagtctgtagaaatatggccgtggatattaaacaatgtg
ccagaaagcttcatggataaatatggcgaggttagctaccaattgcgagctgttataaac
actttgcaaatatatgcgttatatgaacaaggtgttgcagaaaaatcaagttataaagat
ttgaacaaatctgaagattcagtaaatgaaaaatcttataacaatatgggaacagcttta
agaacattaagaagtgatgaaggcgtacgtggagctatggataggcgctttagtgttatg
atcactgcaagcgattacgaaagtttttactactaccttcgtcaactagttcgactacta
aaaagcagaacaaaagaaaatcaacaaacgattgattattctaaacttgcgcgagatttg
tatttgcttcagtttgaagattcagaaaaagtaagactttcctgggcacaagaatattat
cgcttcaccaagtag

DBGET integrated database retrieval system