KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0763
Entry
HMPREF0424_0763   CDS       T01146                                 
Symbol
casD
Name
(GenBank) CRISPR system CASCADE complex protein CasD
  KO
K19125  CRISPR system Cascade subunit CasD
Organism
gva  Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:gva00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gva02048]
    HMPREF0424_0763 (casD)
Prokaryotic defense system [BR:gva02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Subtype I-E factors
    HMPREF0424_0763 (casD)
SSDB
Motif
Pfam: Cas_Cas5d VirDNA-topo-I_N
Other DBs
NCBI-ProteinID: ADB14481
LinkDB
Position
866475..867350
AA seq 291 aa
MKSLLLKFSGPLQSWGTDSHFETRHTDYYPSKSAVIGMIAAAFGYRRSTDCDENIAKLND
LDFAVRIDQQGNLLRDYHIAAKYKANGDFEKNYVTNRYYLEDAIFLVAIGSNNEQLIYDI
SNALRSPYFQSSLGRRSLPPTADFILGVEDCGVIQALLTHEWLANKWSKKRFNTSKLSEA
SESSNESCNEVFISLYADSVLVDKAASELVKDDNTTYKIQESVRRLRKDYVNSFSNKERK
FGFRYESKMEIPIEKISHNNLDSEDISSDSKHLKSVGEFIAEHDAFSGLES
NT seq 876 nt   +upstreamnt  +downstreamnt
atgaaaagtttattactgaagttttctggacctttgcaatcatggggtacagattctcat
tttgaaactcgtcacacggattactatccatctaaaagtgcggtaataggtatgattgct
gcagcttttgggtatagaagaagtacagattgtgatgaaaatattgcgaaacttaatgat
ttagattttgcagtgcgaattgatcagcaagggaatttgcttagggattatcatattgct
gcaaaatataaagctaacggtgattttgaaaaaaattacgttacaaatcgttactatcta
gaagatgctatattcctagttgcaataggatccaacaatgagcaacttatttatgatatt
agcaatgctttgcgctcgccatattttcaatctagtttaggcagaaggtcattgcctcct
actgctgacttcatcctaggagtagaagattgtggagtgattcaggctctattaacgcat
gagtggcttgcaaacaagtggtctaaaaaaagatttaatacttctaaactatctgaagca
tcagagtcttctaatgaatcatgcaatgaagtatttatatccttatacgctgattctgtt
ttagtagataaagctgcatcagaattagttaaagacgataatactacttataaaattcag
gaatcagttcgtagattacgcaaggattacgttaattctttctcaaataaggaaagaaaa
tttggatttcgatacgagtcaaaaatggaaattcctattgagaaaatttcacacaataat
ttggattcggaagatatttcatcagatagtaaacatcttaaatctgttggagagtttatt
gctgagcatgatgctttttctggattggagtcttaa

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