Gardnerella vaginalis ATCC 14019: HMPREF0421_21321
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Entry
HMPREF0421_21321 CDS
T01344
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
gvg
Gardnerella vaginalis ATCC 14019
Pathway
gvg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0421_21321 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gvg03400
]
HMPREF0421_21321 (nth)
Enzymes [BR:
gvg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HMPREF0421_21321 (nth)
DNA repair and recombination proteins [BR:
gvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HMPREF0421_21321 (nth)
Prokaryotic type
HMPREF0421_21321 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
IMS_HHH
INTS15
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ADP39403
UniProt:
E3D826
LinkDB
All DBs
Position
complement(1620302..1620985)
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AA seq
227 aa
AA seq
DB search
MNSSQESSSNSRKSKKIARMSEEYRILCEEIPNPKCALNFTNPFELLIATVLSAQATDRR
VNIVTEQLFRTYPTPKDLARAPIYKVQEIIHQLGFYRVKSQHIIELSQKLMDDFNGVVPN
NMDDLTKLPGVGRKTANVVLGNAFGIPGFPVDTHVMRVTSRLRWRSDWKIAKSDPIKVER
EITSYFPPEEWTNLSHRLILHGRKICTARNPHCADCPLRFLCPSVSL
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
gtgaatagtagtcaagaatcatcttccaattctagaaaatctaaaaaaattgctaggatg
agtgaagagtataggattttatgcgaagaaataccgaatccaaagtgtgcattaaatttt
acaaatccatttgaactactaatagccactgttcttagcgcacaagccactgatagacgt
gtaaatattgtaacggaacaactttttagaacttatcctacgccaaaagatttagcgcgc
gcaccaatatataaggtacaagagatcatccatcaacttggattttatagagtaaaatcg
cagcatattatagagctttcgcaaaaacttatggacgatttcaatggtgtagttccaaat
aatatggatgatcttacaaaacttccaggtgtaggaagaaaaacagcaaacgttgtattg
ggcaatgcttttggtatcccagggtttccagtagatacccacgttatgcgtgtgacgtca
aggcttagatggagaagcgattggaaaatagctaagtcagatcctataaaagttgagcgt
gaaattacatcttattttccgccagaagaatggactaatttgtctcaccgccttattctt
catggtagaaaaatatgtacagctaggaatccgcattgtgctgactgccctctaagattt
ctgtgcccatctgtttcgctgtag
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